prot_H-elongata_contig15492.3603.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15492.3603.1
Unique Nameprot_H-elongata_contig15492.3603.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length513
Homology
BLAST of mRNA_H-elongata_contig15492.3603.1 vs. uniprot
Match: A0A6H5L713_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L713_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 4.520e-59
Identity = 193/608 (31.74%), Postives = 260/608 (42.76%), Query Frame = 0
Query:   25 GSIQKTGSWARATGIMRRSPLIDALHPDIARQRAFQQNLQQSRR----LKTTQSITRDPPASTPPAARDVLS--PSASTYSA----------------GAAREAT-NTRERHRERGGLPVVACPRTILTSRSSTLAGRSKPLVVISPDHHE---------------------------------------VCSSNDTCKEDEDEVG-LTAQQWGRVKSWMARARDSLGPQAWECLGSGAAFRRAQDRI-REVLNPRSII--EDDAEGVFRSVVPDQGGNMSERAAMTGEHRNGVASFKSRVKRKIRTRADESGTRVG------------AKYRGRA--DQLAANLTLAIEAIIWALASEKEKSNTCAAVARERSRLVNRCSVRADGSGEDLGEGYTPELW-----------------------AASTELGISLPRARKFIKACRLIDGVHVLEPDVDLGFKRWEAKARLGGLNVTVAPS--------DTNN--VSKSCFS-------LPKRPRLCQAIGCSEVAQYGDIQPMATARVCRVHKHDGMVDVAGRRCERPNCGRFVVGVGGHMGTSSAALXXXXXXXXXXXVEGMVTVLFELANARFNRAR 512
            GS        RA GI+RRSPLIDALHP++ARQR FQ   +Q+RR    L  ++ I       T   A  + +  PSAST  A                 AAR A  N +   + R G+           +  ++ + R +P  + +   HE                                       +  + D   +D    G LT +Q  RV+ W+ARA  SLGP+ W CLGSG AFRR   RI R ++     I    D  G   +     GG++       G  R      +     K + R D +  R              A+  GR   + L+    L  EA+IW +A+E+E+   CAA+    +   N    R     E  G       W                       AA+TEL ISL  AR+FIK  RL DG+HV++ DVDL FKRWE   RL GL+   +P+        DT+   VS+   S       +P   ++C+A+GCS+ A+YGDI P A AR+CR H++ GMVDV  RRCERP+CGR  VG      T+S  L           VEGM  VL  L+ AR  R R
Sbjct: 1347 GSDAIANEKGRAPGIVRRSPLIDALHPEVARQREFQGKRRQARRRDASLPASEKIVHPADVETGTTASTIAAAGPSASTTDAERRAADARTSPIGAPNAAARAAIGNAKSTKKPRDGITAAVIASNSTDTTGASQSRRRRPRSLWAEKAHEPAAPLPVSSFRTPPSPAGETSRLTLVPAASGAALSEGASISRNVDNADDDASRAGRLTPEQSDRVEEWLARAERSLGPKVWTCLGSGRAFRRTCGRIIRSIIVRGGCIGHAGDRRGGMENCECPPGGSVEPAPGAPGRSRRTARGGRKEGPHK-QARKDRAIDRXXXXXXXXXXXXXXARVDGRGWDEDLSERTALVTEAVIWTIATEREREAACAAIVEAHNENENGNDARERWDEEGNGTDRQATAWVKGGGSPGPQTIDIVHDSSAATSAATTELRISLSTARRFIKRSRLTDGIHVIDADVDLAFKRWEDVERLAGLDQQCSPTAAAACGEEDTSGRVVSREVGSGLADAAAVPIPQKVCEAVGCSDPARYGDIGPKAMARLCRKHRYSGMVDVGSRRCERPDCGRLAVGANATAKTTS--LCTRHARSDRVGVEGMAFVLLILSKARHTRRR 1951          
BLAST of mRNA_H-elongata_contig15492.3603.1 vs. uniprot
Match: D8LHY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY9_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 1.570e-58
Identity = 194/605 (32.07%), Postives = 267/605 (44.13%), Query Frame = 0
Query:   28 QKTGSWARATGIMRRSPLIDALHPDIARQRAFQQNLQQSRRLKTTQSITR------DPPASTPPAA---------------------------------------RDVLSPSASTYSAGAAREATNTRERHRERGGLP---------VVACPRTILTSRSS-TLAGRSKPLVVISPDHHEVCSSN-------DTCKEDEDEVG-LTAQQWGRVKSWMARARDSLGPQAWECLGSGAAFRRAQDRI-REVL----------NPRSIIEDDAEGVFRSVVPDQGGNMSERAAMTGEHRNGVASFKSRVKRKI-RTRADES-GTRVG--AKYRGRA--DQLAANLTLAIEAIIWALASEKEKSNTCAAVARERSRLVNRCSVRADGSGEDLGEGYTPELW-----------------------AASTELGISLPRARKFIKACRLIDGVHVLEPDVDLGFKRWEAKARLGGLNVTVAPS-----------------DTNNVSKSCFSLPKRPRLCQAIGCSEVAQYGDIQPMATARVCRVHKHDGMVDVAGRRCERPNCGRFVVGVGGHMGTSSAALXXXXXXXXXXXVEGMVTVLFELANARFNRAR 512
            +K  +  RA GI+RRSPLIDALHP++ARQR FQ   + +R+       +       D  A T  +A                                       +    P  +T +A  A  +T+T    R R   P           A P  + + R+  + AG +  L ++        S         D+  +D    G LT +Q  RV+ W+ARA  SLGP+ W CLGSG AFRR   RI R ++          + R + E+       SV P  GG    R  M  E R      ++R  R I R R +E+ G R G  A+   R+  + L+    L  EA+IW +A+E+E+   CAA+A  R+   N    R     E       P  W                       AA+TEL ISL  AR+FIK  RL DGVHV++ DVDL FKRWE   RL GL+   +P+                 +  +      ++P   ++C+A+GCS+ A+YGDI P A AR+CR H+H+GMVDV  RRC+RP+CGR  VG   H    + +L           VEGM  VL  L+ AR  R R
Sbjct: 1316 KKDTNSGRAPGIVRRSPLIDALHPEVARQREFQGKRRHARQRDAAVPASEKTIHPADVEAGTTASAIAAAGPGXXXXXXXXXXXXXXXXXXXXXXXXXRAATGNAKSTKKPRDATTAAVVAGNSTDTAGASRSRRRRPRSLWAETAHEPAAPLPVSSFRTPPSPAGETSRLTLVPAASGAAFSEGASIPRNVDSPTDDASRAGRLTPKQSERVEEWLARAERSLGPKVWTCLGSGRAFRRTCGRIIRSIIVRGGGTGHTEDRRDLTENRERPPGGSVKPAPGGPGRSRM-MAREGRKEAPHKQARKGRAIDRDREEENDGGREGGGARVDDRSWDEDLSERTALVTEAVIWTIATERERKTACAAIAEARNDNENGNDARERWDEEGKRTDRHPTAWGKGGGSPGRHTMDIVHDSSAATSAATTELRISLSTARRFIKRSRLTDGVHVIDADVDLAFKRWEEVERLAGLDQQCSPTAAVACGEEDKSGRVVSREVGSGLADAVAVPIPQKVCEAVGCSDPARYGDIGPKAKARLCRKHRHNGMVDVGSRRCDRPDCGRLAVGA--HTTAKATSLCTLHARSDRVDVEGMAFVLLMLSKARHTRRR 1917          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15492.3603.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L713_9PHAE4.520e-5931.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHY9_ECTSI1.570e-5832.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15492contigH-elongata_contig15492:1952..4074 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15492.3603.1mRNA_H-elongata_contig15492.3603.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15492 1952..4074 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15492.3603.1 ID=prot_H-elongata_contig15492.3603.1|Name=mRNA_H-elongata_contig15492.3603.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=513bp
KVSVNFVWPRPDRVCITKCLRPSDGSIQKTGSWARATGIMRRSPLIDALH
PDIARQRAFQQNLQQSRRLKTTQSITRDPPASTPPAARDVLSPSASTYSA
GAAREATNTRERHRERGGLPVVACPRTILTSRSSTLAGRSKPLVVISPDH
HEVCSSNDTCKEDEDEVGLTAQQWGRVKSWMARARDSLGPQAWECLGSGA
AFRRAQDRIREVLNPRSIIEDDAEGVFRSVVPDQGGNMSERAAMTGEHRN
GVASFKSRVKRKIRTRADESGTRVGAKYRGRADQLAANLTLAIEAIIWAL
ASEKEKSNTCAAVARERSRLVNRCSVRADGSGEDLGEGYTPELWAASTEL
GISLPRARKFIKACRLIDGVHVLEPDVDLGFKRWEAKARLGGLNVTVAPS
DTNNVSKSCFSLPKRPRLCQAIGCSEVAQYGDIQPMATARVCRVHKHDGM
VDVAGRRCERPNCGRFVVGVGGHMGTSSAALCTMHAWEGRVDVEGMVTVL
FELANARFNRAR*
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