prot_H-elongata_contig154693.3591.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig154693.3591.1
Unique Nameprot_H-elongata_contig154693.3591.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5K738_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K738_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.250e-15
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 0
Query:    1 MKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSA--KTGMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNLS 101
            ++ P GCG MSG+VV   R ++G +Q+ R+     + A  + G EQ + DPCV+RKVV REV  +I ++VDD+ V A + E  +  +A     FPV D+G  +
Sbjct:   61 LRFPEGCGSMSGKVVKVERALYGPKQSGREWGFEAADALVENGYEQCRVDPCVFRKVVDREVVGLIVIYVDDIFVAADEGER-EVLFASLNKKFPVKDLGECT 162          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5LQZ7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQZ7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.630e-15
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 0
Query:    1 MKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSA--KTGMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNLS 101
            ++LP GCGDMSG+V    R ++GL+Q+ R+     + A    G EQ +ADPCV+R++VG EV  +I ++VDD+++ A ++E  +   +  K  FPV D+G  +
Sbjct:  526 IRLPQGCGDMSGKVCNVERALYGLKQSGREWGFEAADALIANGYEQCRADPCVFRRMVGAEVVGLIVIYVDDILLVASEQERQEVLASLQKK-FPVKDLGECT 627          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.640e-14
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 0
Query:    1 MKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSA--KTGMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNLS 101
            ++LP GCG MSG+VV   R ++GL+Q+ R+     + A  + G EQ + DPCV+RKVV  EV  +I ++VD+++V A + E  + F + +K  FPV  MG  +
Sbjct:  411 LRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVAADEGEREELFASLNKK-FPVKYMGECT 512          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5L3H1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H1_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.670e-14
Identity = 39/103 (37.86%), Postives = 63/103 (61.17%), Query Frame = 0
Query:    1 MKLPAGCGDMSGEVVPQLRDVHGLRQTRRK--SLVGCSSAKTGMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNLS 101
            +++P GCGDMSG+V    R +HGL+Q+ R+       S    G EQ +ADPCV+R++V   V  +I  +VDD+++ A ++E  +   +  K +FPV D+G  +
Sbjct:  355 LRVPQGCGDMSGKVCKVERALHGLKQSVREWGFEAADSLVANGSEQCRADPCVFRRMVDGAVVGLIMTYVDDILLVASEQERQELLASLQK-IFPVKDLGECT 456          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5KEU9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 5.780e-14
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 0
Query:    1 MKLPAGCGDMSGEVVPQLRDVHGLRQTRRK--SLVGCSSAKTGMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNL 100
            M+LP GCG +SG++V   + ++GLRQ  R+  +L+       G EQ  AD CV+R V G EV L++ VHVDD+V     KE  D F        PV  +G L
Sbjct:  230 MRLPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRSVEGGEVVLLLVVHVDDIVAVGT-KERCDQFGKDLGEYVPVKSLGEL 330          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JG17_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG17_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.440e-13
Identity = 38/102 (37.25%), Postives = 64/102 (62.75%), Query Frame = 0
Query:    1 MKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 98
            +++PAGCGD S ++V     ++GL+Q+ R+   G  +A T    G+EQ KADPCV+RK+    V +II ++VDD++V   D++  +   + +K  FP  ++G
Sbjct:   96 LRIPAGCGDKSHKIVKAEGAIYGLKQSGRQW--GYHAADTLVENGLEQYKADPCVFRKMADEVVVMIIVIYVDDILVAGSDEDCEELLASLNKK-FPTKNLG 194          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5KQS5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.520e-12
Identity = 38/102 (37.25%), Postives = 61/102 (59.80%), Query Frame = 0
Query:    1 MKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKT----GMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMG 98
            ++LPAGCGD S  +V   R ++GL+Q+ R+   G  +A T    G E+  ADPCV+R +V   V +II ++VDD +V   D++  +   + +K  FP  ++G
Sbjct:   68 LRLPAGCGDKSHNIVKAERAIYGLKQSGRQW--GYHAADTLVENGFERCNADPCVFRMMVDEVVVMIIVINVDDFLVAGSDEDCEELLASLNKK-FPTKNLG 166          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5KJF9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.940e-12
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 0
Query:    1 MKLPAGCGDMSGEVVPQLRDVHGLRQTRRK---SLVGCSSAKTGMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNL 100
            M+LP GCG +SG +V   + ++GLRQ  R+    L  C  A  G EQ  AD CV+R + G  V LI+ VHVDD+     ++E  D F A      PV ++G L
Sbjct:   33 MRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVA-LGFEQCMADACVFRLIEGGCVVLILVVHVDDIFAVG-EREKCDKFGADLNKSVPVKNLGEL 133          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5KL18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL18_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.850e-12
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 0
Query:    1 MKLPAGCGDMSGEVVPQLRDVHGLRQTRRK--SLVGCSSAKTGMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNL 100
            M+LP GCG +SG++V   + ++GLRQ  R+  +L+       G EQ  AD CV+R V G +V L++ VHVDD+      KE  D F        PV  +G L
Sbjct:  411 MRLPDGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRLVEGGDVVLLLVVHVDDIFAVGT-KERCDQFGKDLGEYVPVKSLGEL 511          
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.320e-12
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 0
Query:    1 MKLPAGCGDMSGEVVPQLRDVHGLRQTRRK--SLVGCSSAKTGMEQSKADPCVYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNL 100
            M+LP GCG +SG++V   + ++GLRQ  R+  +L+       G EQ  AD CV+R V   EV LI+ VHVDD+      KE  D F        PV  +G L
Sbjct:    1 MRLPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRLVEDGEVVLILVVHVDDIFAVGT-KERCDQFGKDLGEYVPVKSLGEL 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154693.3591.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K738_9PHAE1.250e-1539.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LQZ7_9PHAE1.630e-1539.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE2.640e-1440.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3H1_9PHAE3.670e-1437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEU9_9PHAE5.780e-1441.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JG17_9PHAE3.440e-1337.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQS5_9PHAE1.520e-1237.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJF9_9PHAE1.940e-1240.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL18_9PHAE2.850e-1239.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWK8_9PHAE3.320e-1240.20Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 12..101
e-value: 1.2E-7
score: 31.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154693contigH-elongata_contig154693:370..675 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154693.3591.1mRNA_H-elongata_contig154693.3591.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig154693 370..864 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig154693.3591.1 ID=prot_H-elongata_contig154693.3591.1|Name=mRNA_H-elongata_contig154693.3591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MKLPAGCGDMSGEVVPQLRDVHGLRQTRRKSLVGCSSAKTGMEQSKADPC
VYRKVVGREVTLIICVHVDDLVVTAKDKETFDAFYAQSKGVFPVNDMGNL
S*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2