prot_H-elongata_contig154630.3590.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig154630.3590.1
Unique Name	prot_H-elongata_contig154630.3590.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	105

Homology

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BLAST of mRNA_H-elongata_contig154630.3590.1 vs. uniprot
Match: D7G1Y4_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y4_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.670e-45
Identity = 82/105 (78.10%), Postives = 92/105 (87.62%), Query Frame = 0

Query:    1 REELLNCATTRAVAANLFFSFGTVDDRGQVTLQPYDLRRMLQSMGVVVSEDKLNRMVVRADKNSTGYISEDDFLEAFDWLMLQGQDERDYMAIFNMLVSGQRGFL 105
            REEL+  AT RAVAANLFFSFGTV + G+VTLQP+DL RMLQSMGVVVSEDKL++MV RADK++TG ISEDDFLEAFDWLM QGQDERDYMAIFNML   Q G++
Sbjct:   85 REELMMSATERAVAANLFFSFGTVGEDGEVTLQPHDLSRMLQSMGVVVSEDKLSQMVSRADKDATGCISEDDFLEAFDWLMSQGQDERDYMAIFNMLDKDQNGYV 189

[Close]

BLAST of mRNA_H-elongata_contig154630.3590.1 vs. uniprot
Match: A0A7S2E2N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E2N9_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 5.970e-5
Identity = 24/86 (27.91%), Postives = 41/86 (47.67%), Query Frame = 0

Query:   20 SFGTVDDRGQVTLQPYDLRRMLQSMGVVVSEDKLNRMVVRADKNSTGYISEDDFLEAFDWLMLQGQDERDYMAIFNMLVSGQRGFL 105
            +F   D  G  T+ P +L+  +QS+G       + RM+   DK+STG I  D+FL+     M     + D   +F++      G++
Sbjct:    3 AFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYRMIEDIDKDSTGEIDFDEFLDIMTARMSDKDSKEDIQKVFSLFDDDNTGYI 88

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig154630.3590.1 vs. uniprot

BLAST of mRNA_H-elongata_contig154630.3590.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G1Y4_ECTSI	1.670e-45	78.10	N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y4_ECT...	[more]
A0A7S2E2N9_9STRA	5.970e-5	27.91	Hypothetical protein (Fragment) n=1 Tax=Helicothec...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.238.10		coord: 6..105 e-value: 4.5E-11 score: 44.8
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 61..73
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 48..83 score: 10.971
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 17..97

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig154630	contig	H-elongata_contig154630:188..1395 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig154630.3590.1	mRNA_H-elongata_contig154630.3590.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig154630 188..1395 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig154630.3590.1 ID=prot_H-elongata_contig154630.3590.1|Name=mRNA_H-elongata_contig154630.3590.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
REELLNCATTRAVAANLFFSFGTVDDRGQVTLQPYDLRRMLQSMGVVVSE
DKLNRMVVRADKNSTGYISEDDFLEAFDWLMLQGQDERDYMAIFNMLVSG
QRGFL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair