prot_H-elongata_contig15453.3586.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig15453.3586.1
Unique Name	prot_H-elongata_contig15453.3586.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	235

Homology

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BLAST of mRNA_H-elongata_contig15453.3586.1 vs. uniprot
Match: D7FV38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV38_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 6.660e-43
Identity = 104/234 (44.44%), Postives = 132/234 (56.41%), Query Frame = 0

Query:    1 SLFLYLSLSKECDGGLRVWLLVAVCVTAVCGTLGAIFHGRRDANRPSRFFDRGDNAADXXXXXXTYLDGDSAVNGSAHFGPRGM--DLGPLDAPGRTAPSGLPV-----LAEGEEFAVNGDVREGTIRAVEGGEQDPIDDGITSAHGSSVSVQLATRAASSLQLQYFGPGPKMYPDAIFLVLVLSQWFLAAWSVVGAVLYFRLFGGGRSCSRELPITPSEAVLQGYARATRALC 227
            S+ L L  +KECDGGLR WLL  VCVTA+C  LGAIFHGR +  RPSRF D  D+ A         +   SA  G+   G R    ++GP DA G    S + +     + EG      G V  G +   E       D+ I S   S++S +LA ++ SSLQ +YFGPGPK++PD IF +LV+SQWFLA WSVVGA LYFRLF G R+CS  L       V+ G+     A+C
Sbjct:   24 SVVLGLQWNKECDGGLRTWLLTTVCVTAICSGLGAIFHGRGNGTRPSRFLD--DDDAWGVDDDSINVSVSSAAGGT---GGRASPPEMGPEDANGNGKRSDIRITPPFKMEEGGGSGGKG-VNGGGMAGGEERRDSMGDESIVSGVPSTISHRLAAQS-SSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVC 250

[Close]

BLAST of mRNA_H-elongata_contig15453.3586.1 vs. uniprot
Match: A0A6H5K0Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.940e-27
Identity = 80/203 (39.41%), Postives = 104/203 (51.23%), Query Frame = 0

Query:   33 LGAIFHGRRDANRPSRFFDRGDNAADXXXXXXTYLDGDSAVNGSAHFGPRGMDLGPLDAPGRTAPSGLPVLAEGEEFAVNGDVREGTIRAVEGGEQ-DPI-DDGITSAHGSSVSVQLATRAASSLQLQYFGPGPKMYPDAIFLVLVLSQWFLAAWSVVGAVLYFRLFGGGRSCSRELPITPSEAVLQGYARATRALCVTSPMC 233
            LGA FHGR D  RPSRF D      D      +         G A       ++GP    G  +   +    + EE   +G  R        G E+ D + D+ I S   S++S +LA ++ SSLQ +YFGPGPK++PD IF +LV+SQWFLA WSVVGA LYFRLF G R CS  L       V+ G+     A+C +  MC
Sbjct:    2 LGATFHGRGDGTRPSRFLDDDAWGVDDDSINVSVSSAAGGTGGRASP----PEMGPEHTNGNGSDIRITPPFKMEEGGGDGGKRVNGXXMAGGEERRDSMGDESIVSGVPSTISHRLAAQS-SSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRMCSPLLRHWTLLVVIIGFLSCLLAVCYSGIMC 199

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig15453.3586.1 vs. uniprot

BLAST of mRNA_H-elongata_contig15453.3586.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FV38_ECTSI	6.660e-43	44.44	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K0Y0_9PHAE	3.940e-27	39.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 16..38
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 39..169
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..15
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 170..194
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 195..234
None	No IPR available	TMHMM	TMhelix		coord: 15..37
None	No IPR available	TMHMM	TMhelix		coord: 171..193

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig15453	contig	H-elongata_contig15453:168..1816 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig15453.3586.1	mRNA_H-elongata_contig15453.3586.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig15453 168..1816 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig15453.3586.1 ID=prot_H-elongata_contig15453.3586.1|Name=mRNA_H-elongata_contig15453.3586.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
SLFLYLSLSKECDGGLRVWLLVAVCVTAVCGTLGAIFHGRRDANRPSRFF
DRGDNAADDDDDDDTYLDGDSAVNGSAHFGPRGMDLGPLDAPGRTAPSGL
PVLAEGEEFAVNGDVREGTIRAVEGGEQDPIDDGITSAHGSSVSVQLATR
AASSLQLQYFGPGPKMYPDAIFLVLVLSQWFLAAWSVVGAVLYFRLFGGG
RSCSRELPITPSEAVLQGYARATRALCVTSPMCI*