prot_H-elongata_contig15443.3581.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15443.3581.1
Unique Nameprot_H-elongata_contig15443.3581.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length186
Homology
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BLAST of mRNA_H-elongata_contig15443.3581.1 vs. uniprot
Match: D7FI85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI85_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 3.530e-54
Identity = 112/204 (54.90%), Postives = 138/204 (67.65%), Query Frame = 0 
Query:    1 MTHSRIVDTSLIYEGEDMKFSTPSLKDVVKTTLGKDIQSGSHDSVTDAQCTLDVARFALERRGAPLPQVARTKRNSRR------------SASRR----------TRDTKDEQNSSALLVHRLPRGTTAQQLLRVMQKKTRTAAVNAQPVVFNGTTGKSLVIYESIAQADKAFNTISSTAVEDASGRLQKKIFTSNDRKKHISV 182
            MTH R+VDTS ++EG D KFSTPSLKDVVK  LG+ IQ GSHDSVTDA+ TL+VAR+ALE+ GAPLP + RTK+ SRR               RR           R  K E+   +L+VHRLP GTT +QL+RVMQKKT+  A  A+ + F GTTGK+ V+Y +   AD AFN IS+ A ED SGRLQK+I+TS D KK+I+V
Sbjct:  712 MTHDRVVDTSFLFEGSDEKFSTPSLKDVVKVALGRHIQDGSHDSVTDAKSTLEVARYALEKVGAPLPPIDRTKKASRRWNGEGSSDDAGGRKKRRGLENGEDDADARAAKAEKERRSLMVHRLPAGTTPEQLMRVMQKKTKVIAQEAEGIEFTGTTGKTHVVYATKELADVAFNGISTAAKEDTSGRLQKRIYTSEDGKKYIAV 915
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BLAST of mRNA_H-elongata_contig15443.3581.1 vs. uniprot
Match: A0A836CAS9_9STRA (Ribonuclease H-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAS9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.570e-13
Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = 0 
Query:    1 MTHSRIVDTSLIY--EGEDMKFSTPSLKDVVKTTLGKDIQSGSHDSVTDAQCTLDVARFALERRGAPLPQVARTKRNSR-RSASRRTRDTKDEQNSSALLVHRLPRGTTAQQLLRVMQKKTR 119
            M H R+VDTS ++  EGE    +TPSL+D+ K  L K+IQSGSH SVTDA   L+VA+FAL+R    LP + R     + ++A  R +          LLVHR+P G  A  L     K  R
Sbjct:  128 MVHERVVDTSFLFALEGEGPS-ATPSLRDLAKAVLDKEIQSGSHSSVTDAVTALEVAQFALDRGAEALPLIKRGCGGGKPKNAGMRAQ----------LLVHRIPLGIKAAHLTTAFTKLVR 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15443.3581.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI85_ECTSI3.530e-5454.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAS9_9STRA1.570e-1342.62Ribonuclease H-like domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..79
e-value: 1.1E-9
score: 40.0
NoneNo IPR availablePANTHERPTHR12801EXONUCLEASEcoord: 2..184
NoneNo IPR availablePANTHERPTHR12801:SF132SMALL RNA DEGRADING NUCLEASE 1-RELATEDcoord: 2..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15443contigH-elongata_contig15443:4009..5629 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15443.3581.1mRNA_H-elongata_contig15443.3581.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15443 4009..5629 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15443.3581.1 ID=prot_H-elongata_contig15443.3581.1|Name=mRNA_H-elongata_contig15443.3581.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MTHSRIVDTSLIYEGEDMKFSTPSLKDVVKTTLGKDIQSGSHDSVTDAQC
TLDVARFALERRGAPLPQVARTKRNSRRSASRRTRDTKDEQNSSALLVHR
LPRGTTAQQLLRVMQKKTRTAAVNAQPVVFNGTTGKSLVIYESIAQADKA
FNTISSTAVEDASGRLQKKIFTSNDRKKHISVTTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf