prot_H-elongata_contig15443.3580.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15443.3580.1
Unique Nameprot_H-elongata_contig15443.3580.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length234
Homology
BLAST of mRNA_H-elongata_contig15443.3580.1 vs. uniprot
Match: D7FI85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI85_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 1.320e-69
Identity = 116/195 (59.49%), Postives = 140/195 (71.79%), Query Frame = 0
Query:   29 GLLDGLPISPFPTTAETAASTEKDNIRVVCQGGLEDERAAKPQEVPHTRADCWQELVERTRAHPKYADHYTFKADATWVKASPCGDACDSLPQVVAVDCEMCISKDPVTKECNSGELLRMSIVRGEDGKKLIDTLVRPANPVIDWVTKIHGVGSQQMTGVQFTLSRHAQAAMRRICCERTVIIGHALFNDLKALK 223
            G+ DGLPISPF   A+     +   +  V            P  +PH +AD WQ LVERTRAHPK+A +Y+F+ DATWV ASPCGD+C  LPQV+A+DCEMC+S+DP++KE N  ELLR+SIVRGEDG+KL+DTLVRP NPV+DW T IHGV  + + GV FT  RHAQ A+ RICC  TVIIGHAL NDL ALK
Sbjct:  528 GIFDGLPISPFVAAADKDKEEKPAAVAAV----------VAPASIPHPKADVWQGLVERTRAHPKFAKNYSFETDATWVTASPCGDSCPGLPQVIALDCEMCMSEDPLSKERNGKELLRLSIVRGEDGEKLMDTLVRPGNPVVDWRTDIHGVAPEHLEGVMFT-HRHAQVAISRICCPHTVIIGHALNNDLSALK 711          
BLAST of mRNA_H-elongata_contig15443.3580.1 vs. uniprot
Match: A0A7R9Y9T2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9T2_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.750e-37
Identity = 74/144 (51.39%), Postives = 99/144 (68.75%), Query Frame = 0
Query:   81 WQELVERTRAHPKYADHYTFKADATWVKASPCGDACDSLPQVVAVDCEMCISKDPVTKECNSGELLRMSIVRGEDGKK-LIDTLVRPANPVIDWVTKIHGVGSQQMTGVQFTLSRHAQAAMRRICCERTVIIGHALFNDLKALK 223
            W++L ++   H K+   ++F  D++WV+    GD C  LPQ +A+DCEMC  KDPVT E ++  L R S+V GE GK  LIDTLV+P  PV D+ T IHG+  +Q+ GV FTL RHAQAAMR IC  +T+IIGHA+ NDL +L+
Sbjct:  386 WEKLRKKCSRHRKFETLFSFDTDSSWVRPREYGDWCKDLPQYIAIDCEMCGGKDPVTGEIDAKVLCRFSVVSGEGGKDVLIDTLVQPHMPVQDYRTDIHGITKEQLEGVPFTL-RHAQAAMRSICSSKTIIIGHAVHNDLVSLR 528          
BLAST of mRNA_H-elongata_contig15443.3580.1 vs. uniprot
Match: A0A7S4EFC5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EFC5_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.010e-33
Identity = 85/211 (40.28%), Postives = 124/211 (58.77%), Query Frame = 0
Query:   30 LLDGLPISPFPTTAETAASTEKDNIRVVCQGGLEDERAAKPQE----VPHTRA--DCWQELVERTRAHPKYADHYTF----KAD------ATWVKASPCGDACDSLPQVVAVDCEMCISKDPVTKECNSGELLRMSIVRGEDGKK-LIDTLVRPANPVIDWVTKIHGVGSQQMTGVQFTLSRHAQAAMRRICCERTVIIGHALFNDLKALK 223
             L  LP++ F  +   A   +K+   VV     +D+   K +E    +P + A    WQ+ V  +R H +Y+  + F    K D      ATW+KA P G  C S PQ +A+DCEMC S+DP++   NS  L R+S+V  E  ++ L+DTLV+PA PV D+ T+I+G+  + +  V+FTL RHAQA M ++C E T+I+GHA+ NDL ALK
Sbjct:  174 FLSSLPVASF--SIPGATPVKKEEQIVVPTKAPKDKATPKKEEKGPLLPTSTAIGRKWQKPVIESRKHERYSGAHDFARHKKLDTENGIGATWIKAKPYGSWCKSNPQAIAIDCEMCESQDPLSGAKNSKALCRISVVNAEKPEEVLLDTLVKPAWPVTDYRTRINGIKKENLDNVEFTL-RHAQAFMLKLCSEETIIVGHAIVNDLVALK 381          
BLAST of mRNA_H-elongata_contig15443.3580.1 vs. uniprot
Match: B5Y560_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y560_PHATC)

HSP 1 Score: 137 bits (344), Expect = 1.050e-33
Identity = 66/155 (42.58%), Postives = 103/155 (66.45%), Query Frame = 0
Query:   81 WQELVERTRAHPKYADHYTF---KA---------DATWVKASPCGDACDSLPQVVAVDCEMCISKDPVTKECNSGELLRMSIVRGEDGKKLIDTLVRPANPVIDWVTKIHGVGSQQMTGVQFTLSRHAQAAMRRICCERTVIIGHALFNDLKALK 223
            W + +++ R H KYA  Y F   KA          +TW++A P G+ C   PQ +A+DCEMC ++DPV+ + N+ +L R+SIV  E+ + L+D+LV+P+ PV+D+ ++I+G+  + + GVQFTL RH QA +  +C + TVI+GHAL NDL A++
Sbjct:  237 WMKAIQQARQHHKYATAYDFVKYKALDAEIGLDPSSTWIQAKPYGEWCKGFPQAIAIDCEMCETEDPVSGKHNAKDLCRVSIVNAENDEVLLDSLVKPSWPVVDYRSRINGITEEHLKGVQFTL-RHTQAFLMALCSQETVILGHALHNDLAAMR 390          
BLAST of mRNA_H-elongata_contig15443.3580.1 vs. uniprot
Match: A0A7S2KAR6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KAR6_9STRA)

HSP 1 Score: 134 bits (337), Expect = 9.820e-33
Identity = 67/148 (45.27%), Postives = 97/148 (65.54%), Query Frame = 0
Query:   81 WQELVERTRAHPKYADHYTFKADAT----WVKASPCGDACDSLPQVVAVDCEMCISKDPVTKECNSGELLRMSIVRGEDGKK-LIDTLVRPANPVIDWVTKIHGVGSQQMTGVQFTLSRHAQAAMRRICCERTVIIGHALFNDLKALK 223
            W++LV+ TR+HP+Y   Y F   A     WV+A   G  C + PQ +A+DCEMC +K P T   N+  L R+S++ G++  + LIDTLV+P  PV D+ ++I+G+  + +  VQFTL +HAQ  M+ +C   TVIIGHA+ NDL+ALK
Sbjct:  246 WKDLVQLTRSHPRYESSYRFSQTAEESDGWVRAKAFGSWCAAFPQSIAIDCEMCATKCPQTNTVNNSALCRLSVINGDNPSEVLIDTLVKPDWPVSDYRSRINGIKEEHLAEVQFTL-KHAQEFMQALCSNETVIIGHAVHNDLEALK 392          
BLAST of mRNA_H-elongata_contig15443.3580.1 vs. uniprot
Match: A0A448Z8R7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8R7_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.270e-32
Identity = 68/154 (44.16%), Postives = 101/154 (65.58%), Query Frame = 0
Query:   81 WQELVERTRAHPKYADHYTF----------KADATWVKASPCGDACDSLPQVVAVDCEMCISKDPVTKECNSGELLRMSIVRGEDGKK-LIDTLVRPANPVIDWVTKIHGVGSQQMTGVQFTLSRHAQAAMRRICCERTVIIGHALFNDLKALK 223
            WQ+ +  TR H +Y + + F            +ATW KA P G  C+S PQ +A+DCEMC ++DP+T   NS  L R+S+V  E+ ++ L+DTLV+PA PV D+ ++I+G+  + +  V+FTL RHAQA M ++C + TVI+GHA+ NDL +LK
Sbjct:  216 WQKSIIETRKHDRYDNSHNFDRYKELDAENNIEATWFKAKPYGPWCESNPQAIAIDCEMCETQDPLTGGKNSKALCRISVVNAENPEEVLLDTLVKPAWPVTDYRSRINGIKKEHLDXVEFTL-RHAQAFMLKLCSQETVIVGHAVSNDLVSLK 368          
BLAST of mRNA_H-elongata_contig15443.3580.1 vs. uniprot
Match: A0A7S3URN3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URN3_HETAK)

HSP 1 Score: 130 bits (328), Expect = 2.970e-32
Identity = 75/153 (49.02%), Postives = 100/153 (65.36%), Query Frame = 0
Query:   81 WQELVERTRAHPKYADHYTFK-ADATWVKASPCGDACDSLP---QVVAVDCEMCISKDPVTKECNSGELLRMSIVRGEDGKK--LIDTLVRPANPVIDWVTKIHGVGSQQMTGVQFTLSRHAQAAMRRICCERTVIIGHALFNDLKALKARKA 227
            W  L E TR HPKYA  + F+ AD +WV          SLP    V+A+DCEMC S+DPV+K  N  EL+R+S+VRG  G    ++D+LVRP N V D   +I+G+G  Q+ GVQFTL RHAQAA+  +   +T+++GHAL NDL+AL+ R A
Sbjct:  256 WAGLAELTRRHPKYAALFAFEGADGSWVSPPA------SLPGAAAVLALDCEMCESEDPVSKAKNEKELVRVSVVRGAAGAADVVLDSLVRPLNTVTDHRERINGIGPAQLAGVQFTL-RHAQAALLHLVDSKTLLVGHALHNDLEALRFRPA 401          
BLAST of mRNA_H-elongata_contig15443.3580.1 vs. uniprot
Match: A0A4D9CRL8_9STRA (C3H1-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRL8_9STRA)

HSP 1 Score: 132 bits (332), Expect = 7.910e-32
Identity = 83/226 (36.73%), Postives = 118/226 (52.21%), Query Frame = 0
Query:   31 LDGLPISPFPTTAETAASTEKDNI----RVVCQGGLEDERAAKP---------------------QEVPHTRADCWQELVERTRAHPKYADHYTF-----KADATWVKASPCGDACDSLPQVVAVDCEMCISKDPVTKECNSGELLRMSIVRGEDGKK-LIDTLVRPANPVIDWVTKIHGVGSQQMTGVQFTLSRHAQAAMRRICCERTVIIGHALFNDLKALKAR 225
            L  LP++PF    +   +T  D+      +V   G E E +A+                      +EV       W   V+ T  H ++  +Y       K +A W++A   G  C  LP V+A+DCEMC ++DPV+ E +   L+R+S+V G D K+ L+DTLV P+ PVID+ T IHG+  + +  V FT  RHAQAAM  +CC  TV+IGH L NDL ALK +
Sbjct:  242 LSALPVTPFTIARKPNGATRDDDEPEDGELVQGEGEEGEESAQSVVGANLSQHAKEESCQAEAVKEEVCFHAGSPWTGCVKATMEHARFEANYRALAAQKKGEADWIEAKKHGAWCRDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVCGHDEKQVLLDTLVLPSLPVIDYRTDIHGIRPEDLRQVMFTF-RHAQAAMLHLCCTETVLIGHGLCNDLTALKMK 466          
BLAST of mRNA_H-elongata_contig15443.3580.1 vs. uniprot
Match: A0A1E7FWM9_9STRA (C3H1-type domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWM9_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.280e-29
Identity = 67/153 (43.79%), Postives = 95/153 (62.09%), Query Frame = 0
Query:   81 WQELVERTRAHPKYADHYTFKA----------DATWVKASPCGDACDSLPQVVAVDCEMCISKDPVTKECNSGELLRMSIVRGEDGKK-LIDTLVRPANPVIDWVTKIHGVGSQQMTGVQFTLSRHAQAAMRRICCERTVIIGHALFNDLKAL 222
            WQ  V  +R H +Y + + F             ++W+KA   G  C S PQ +A+DCEMC S+DP++   N+  L R+S+V  E  ++ L+DTLV+P+ PV D+ T+I+GV  + +  V+FTL RHAQA M  +C E TVI+GHAL NDL AL
Sbjct:  251 WQNAVIESRKHARYNNSFDFNRYQENDAKNGIQSSWIKAKAYGSWCASNPQAIAIDCEMCESQDPLSGAKNAKALCRLSVVNAEKPEEVLLDTLVKPSWPVTDYRTRINGVTKEHLDPVEFTL-RHAQAFMMALCNEETVIVGHALHNDLVAL 402          
BLAST of mRNA_H-elongata_contig15443.3580.1 vs. uniprot
Match: A0A7S4NAX0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NAX0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.050e-28
Identity = 72/171 (42.11%), Postives = 102/171 (59.65%), Query Frame = 0
Query:   70 PQEVP--HTRADCWQELVERTRAHPKYADHYTF-KADAT------WVKASPCG--DACDSLPQVVAVDCEMCISKDPVTKECNSGELLRMSIVRGED------GKKLIDTLVRPANPVIDWVTKIHGVGSQQMTGVQFTLSRHAQAAMRRICCERTVIIGHALFNDLKALK 223
            PQ +P   TR   W + V++TR HP Y+    F +A A       W+KA P G   A  + P  +A+DCEMC ++DPVT + ++  L R+S+V   D      GK L+DTLV+P  PV+++VT +HG+    +  VQFTL RHAQ  M  I  E TV++GHA+ NDL +L+
Sbjct:  136 PQPLPLSDTRGHRWVDAVKKTRGHPLYSKSLNFERAKAQNPGAFRWIKARPPGPWSANGACPAAIAMDCEMCQTRDPVTGKMDAKALCRLSVVDASDPYDPEGGKVLLDTLVKPHWPVVNYVTWVHGIKPADLANVQFTL-RHAQDFMMSIMTEETVVVGHAVHNDLMSLR 305          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15443.3580.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI85_ECTSI1.320e-6959.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9Y9T2_9STRA1.750e-3751.39Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S4EFC5_9STRA1.010e-3340.28Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
B5Y560_PHATC1.050e-3342.58Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2KAR6_9STRA9.820e-3345.27Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A448Z8R7_9STRA2.270e-3244.16Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3URN3_HETAK2.970e-3249.02Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9CRL8_9STRA7.910e-3236.73C3H1-type domain-containing protein n=2 Tax=Monodo... [more]
A0A1E7FWM9_9STRA2.280e-2943.79C3H1-type domain-containing protein n=1 Tax=Fragil... [more]
A0A7S4NAX0_9STRA1.050e-2842.11Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 119..231
e-value: 5.3E-19
score: 70.3
NoneNo IPR availablePANTHERPTHR12801:SF132SMALL RNA DEGRADING NUCLEASE 1-RELATEDcoord: 73..223
NoneNo IPR availablePANTHERPTHR12801EXONUCLEASEcoord: 73..223
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 120..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15443contigH-elongata_contig15443:1..3258 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15443.3580.1mRNA_H-elongata_contig15443.3580.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15443 1..3259 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15443.3580.1 ID=prot_H-elongata_contig15443.3580.1|Name=mRNA_H-elongata_contig15443.3580.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
EAVNTRLTRKRGRSETPSEGQAIPGPSGGLLDGLPISPFPTTAETAASTE
KDNIRVVCQGGLEDERAAKPQEVPHTRADCWQELVERTRAHPKYADHYTF
KADATWVKASPCGDACDSLPQVVAVDCEMCISKDPVTKECNSGELLRMSI
VRGEDGKKLIDTLVRPANPVIDWVTKIHGVGSQQMTGVQFTLSRHAQAAM
RRICCERTVIIGHALFNDLKALKARKAYFSLIYF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf