prot_H-elongata_contig154035.3562.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig154035.3562.1
Unique Nameprot_H-elongata_contig154035.3562.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length136
Homology
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BLAST of mRNA_H-elongata_contig154035.3562.1 vs. uniprot
Match: A0A6H5JJ25_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ25_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.540e-12
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 0 
Query:    1 MGILDGLCDYDDGEAEVSWTSFWRIENLCAVTTLGAVVPLLVAGLTCVAMTVLWARSSATTRRHDKGYYRQL--NINDPSDATSSSAQEGGYEESKSSY 97
            MG LDGLCD  DGEAE SW  FW ++N+C++TTLGAVV  LVA ++ VAM V +  SS+       GY  +L  ++ND           GG EE+K S+
Sbjct:    1 MGFLDGLCDSPDGEAEFSWHDFWLLDNVCSLTTLGAVVAGLVALMSFVAMLVQYGCSSSGGGCRATGYANKLWNSVNDG----------GGREETKGSH 89
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BLAST of mRNA_H-elongata_contig154035.3562.1 vs. uniprot
Match: D7G0B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B6_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 5.350e-12
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 0 
Query:    1 MGILDGLCDYDDGEAEVSWTSFWRIENLCAVTTLGAVVPLLVAGLTCVAMTVLWARSSA 59
            MG LDGLCD  DGEA+ SW  FWR++N+C++TTLGAVV  LVA L+ VAM V +  SS+
Sbjct:    1 MGFLDGLCDSPDGEAKFSWHDFWRLDNVCSLTTLGAVVAGLVALLSFVAMLVHYGCSSS 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154035.3562.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJ25_9PHAE1.540e-1246.46ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G0B6_ECTSI5.350e-1261.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 56..136
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..55
NoneNo IPR availableTMHMMTMhelixcoord: 32..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154035contigH-elongata_contig154035:544..951 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154035.3562.1mRNA_H-elongata_contig154035.3562.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig154035 532..951 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig154035.3562.1 ID=prot_H-elongata_contig154035.3562.1|Name=mRNA_H-elongata_contig154035.3562.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MGILDGLCDYDDGEAEVSWTSFWRIENLCAVTTLGAVVPLLVAGLTCVAM
TVLWARSSATTRRHDKGYYRQLNINDPSDATSSSAQEGGYEESKSSYSHQ
DGNGFAANASEPLLGNRRTSSNGGFVNSTDLPMETG
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