prot_H-elongata_contig15362.3538.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15362.3538.1
Unique Nameprot_H-elongata_contig15362.3538.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length384
Homology
BLAST of mRNA_H-elongata_contig15362.3538.1 vs. uniprot
Match: D7G6J3_ECTSI (Similar to ring finger protein 167 isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J3_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 2.380e-56
Identity = 127/238 (53.36%), Postives = 145/238 (60.92%), Query Frame = 0
Query:    1 MSGTFLFNSTLILLGFVWCGVTFARLVCVHRARENNA----FLQERGTFATGFGARIGAG--GGVDGAGSGPAPVGLTAAQIETLEQTSVVPSKRNFGLKGAHGSAAAADSRVVGDLEAR-----GGEGEKGEWSS-----ENEAMCAICLCEEEDGQSLRVLPCGHFFHASCVDVWLSQSPTCPFCKQAVEVLPPDGRGKSVAARVGASVARVRNVPRWLMRSNGSLDGDANASAPP 222
            +S +FLFNSTLILLGFVWCGVTFARLVCVHRARE+      F   RG    G G + GAG  G   GA +   P GLT AQI +LEQT+V+P  R FG K A G          GD++       GG G+  E ++     E EA CAICLCEEEDGQ LRVLPCGHFFHA CVDVWL+QSPTCPFCKQ VE  PP    K  A  VG+S   VR++ RWL             +APP
Sbjct:   21 ISTSFLFNSTLILLGFVWCGVTFARLVCVHRARESALSGAHFSDRRG----GRGDQTGAGFTGTGLGAATSAGPAGLTPAQIRSLEQTNVLPKHRRFGSKLAGGG---------GDMDVEKGWGVGGPGKGTEPAAAGEGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVE--PPSTESK--AGLVGSSAVPVRSLRRWLRNHERGPGAVVAQTAPP 241          
BLAST of mRNA_H-elongata_contig15362.3538.1 vs. uniprot
Match: A0A6H5JXB7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXB7_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.330e-54
Identity = 120/220 (54.55%), Postives = 138/220 (62.73%), Query Frame = 0
Query:    1 MSGTFLFNSTLILLGFVWCGVTFARLVCVHRAREN---NAFLQERGTFATGFGARIGAGGGVDGAGSGPA--PVGLTAAQIETLEQTSVVPSKRNFGLKGAHGSAAAADSRVVGDLEARGGEGEKGEWSS----------ENEAMCAICLCEEEDGQSLRVLPCGHFFHASCVDVWLSQSPTCPFCKQAVEVLPPDGRGKSVAARVGASVARVRNVPRWL 205
            +S +FLFNSTL+LLGFVWCGVTFARLVCVHRARE+    A L +R     G G + GAG  + G G+  +  P GLT AQI +LEQT+V+P  R FG K   G          GD++   G G  G              E EAMCAICLCEEEDGQ LRVLPCGHFFHA CVDVWL+QSPTCPFCKQ VE  PP    K     +G+S A  R+V RWL
Sbjct:  223 ISSSFLFNSTLVLLGFVWCGVTFARLVCVHRARESALSGAHLSDR---RGGRGDQTGAGLTLTGLGAATSAGPAGLTPAQIRSLEQTNVLPKHRRFGSKLVGGG---------GDMDVEKGWGVSGPGKGTEPAVAGEGVEEEAMCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVE--PPSTESK--VGPLGSSAAPFRSVRRWL 426          
BLAST of mRNA_H-elongata_contig15362.3538.1 vs. uniprot
Match: A0A7R9YZI2_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YZI2_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 2.960e-13
Identity = 65/173 (37.57%), Postives = 88/173 (50.87%), Query Frame = 0
Query:   53 IGAGGGVDGAGSGPAPVGLTA--AQIETLEQTSVVPSKRNFGLKGAHGSAAAADSRVVGDLEARGGEGEKGEWSSEN-EAMCAICLCEEEDGQSLRVLPCGHFFHASCVDVWLSQSPTCPFCKQAVEVLPPDGRGK-SVAARVGASVARVRNVPRWLMRSNGSLD-GDANASA 220
            +GAG      G G AP    A  AQ  + E      + R   LK A G AAAA +   G   A+   G+KG+  +EN +  CA+CL E E GQ LR LPC H+FH  C+D+W+++  TCP C+  +   PP    + ++A  + AS+  VR V     R  G  D  DA  SA
Sbjct:  405 VGAGDDSASPGHGGAPCAGVAGGAQAASAEGAPDDAAMRVRSLKPA-GGAAAAGATGDGATPAQAA-GQKGDNDAENPDHQCAVCLSEFESGQLLRALPCQHYFHQDCIDLWMAKRNTCPICRLKLCADPPPANHRDALALAIAASLEEVREVA--ARRGTGDADEADAGPSA 573          
BLAST of mRNA_H-elongata_contig15362.3538.1 vs. uniprot
Match: A0A7R9VJC0_9CHLO (Hypothetical protein n=2 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VJC0_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 3.740e-13
Identity = 65/173 (37.57%), Postives = 88/173 (50.87%), Query Frame = 0
Query:   53 IGAGGGVDGAGSGPAPVGLTA--AQIETLEQTSVVPSKRNFGLKGAHGSAAAADSRVVGDLEARGGEGEKGEWSSEN-EAMCAICLCEEEDGQSLRVLPCGHFFHASCVDVWLSQSPTCPFCKQAVEVLPPDGRGK-SVAARVGASVARVRNVPRWLMRSNGSLD-GDANASA 220
            +GAG      G G AP    A  AQ  + E      + R   LK A G AAAA +   G   A+   G+KG+  +EN +  CA+CL E E GQ LR LPC H+FH  C+D+W+++  TCP C+  +   PP    + ++A  + AS+  VR V     R  G  D  DA  SA
Sbjct:  694 VGAGDDSASPGHGGAPCAGVAGGAQAASAEGAPDDAAMRVRSLKPA-GGAAAAGATGDGATPAQAA-GQKGDNDAENPDHQCAVCLSEFESGQLLRALPCQHYFHQDCIDLWMAKRNTCPICRLKLCADPPPANHRDALALAIAASLEEVREVA--ARRGTGDADEADAGPSA 862          
BLAST of mRNA_H-elongata_contig15362.3538.1 vs. uniprot
Match: A0A5J4YP56_PORPP (E3 ubiquitin protein ligase RIE1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YP56_PORPP)

HSP 1 Score: 80.5 bits (197), Expect = 5.310e-13
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 0
Query:  125 SENEAMCAICLCEEEDGQSLRVLPCGHFFHASCVDVWLSQSPTCPFCKQAVEVLPPDGRGKSVAARVGASVA 196
            S+ + +CAICLCE E  + LRVLPC H FH++CVD WL +S  CP CKQ +     + RG   +A   +++A
Sbjct:  242 SDEDCLCAICLCEYEPDEKLRVLPCNHVFHSTCVDTWLGRSRQCPVCKQEIVTDSANARGTEPSADASSAIA 313          
BLAST of mRNA_H-elongata_contig15362.3538.1 vs. uniprot
Match: UPI0019D64F63 (RING-H2 finger protein ATL8-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D64F63)

HSP 1 Score: 73.6 bits (179), Expect = 4.220e-12
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 0
Query:  122 EWSSENEAMCAICLCEEEDGQSLRVLP-CGHFFHASCVDVWLSQSPTCPFCKQAVEV-LPPDGRGKSVAARVGASVA 196
            E S E  A CAIC+ E E+G+++RVLP CGH FHA+C+D WL    TCP C++ + + LPPD R     AR  A  A
Sbjct:   56 EESREAAAECAICMVEFEEGEAVRVLPPCGHGFHAACIDKWLHGHSTCPSCRRILSLRLPPDERCSRCGARPHAGDA 132          
BLAST of mRNA_H-elongata_contig15362.3538.1 vs. uniprot
Match: R7TSL4_CAPTE (RING-type domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TSL4_CAPTE)

HSP 1 Score: 68.6 bits (166), Expect = 3.080e-11
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 0
Query:  124 SSENEAMCAICLCEEEDGQSLRVLPCGHFFHASCVDVWLSQSPTCPFCK 172
            SS ++  C +C+CE E  Q LRVLPC H FHA CVD WL  + TCP C+
Sbjct:   13 SSMDQISCVVCMCEFEQRQLLRVLPCSHEFHAKCVDKWLKSNRTCPICR 61          
BLAST of mRNA_H-elongata_contig15362.3538.1 vs. uniprot
Match: A0A1Y1VZL6_9FUNG (RING-type domain-containing protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1VZL6_9FUNG)

HSP 1 Score: 75.1 bits (183), Expect = 3.160e-11
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 0
Query:  127 NEAMCAICLCEEEDGQSLRVLPCGHFFHASCVDVWLSQSPTCPFCKQAVEVLPPDGRGKSVAA 189
            N+ MCAICLCE E+G  LR+LPCGH  H SCVD WL  + TCP CK+   V  P    +  AA
Sbjct:  280 NDDMCAICLCEYENGDVLRLLPCGHHMHQSCVDEWLHINRTCPLCKR---VATPGAESEEAAA 339          
BLAST of mRNA_H-elongata_contig15362.3538.1 vs. uniprot
Match: A0A7S0PRV2_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PRV2_MICPS)

HSP 1 Score: 75.1 bits (183), Expect = 4.030e-11
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 0
Query:  115 GGEGEKGEWSSENEAMCAICLCEEEDGQSLRVLPCGHFFHASCVDVWLSQSPTCPFCKQAVEVLPPDGRGKSVAARVG 192
            G EG +G   S+    C++CLC+ EDG ++R LPC H +HA+C+D WL +  TCP CK  V      G G +    VG
Sbjct:  363 GAEGAEGAAGSQV-PCCSVCLCDAEDGDAMRTLPCAHSYHAACIDKWLGEHATCPVCKHDVREGLASGEGTAAGGGVG 439          
BLAST of mRNA_H-elongata_contig15362.3538.1 vs. uniprot
Match: E9H728_DAPPU (RING-type domain-containing protein (Fragment) n=3 Tax=Daphnia TaxID=6668 RepID=E9H728_DAPPU)

HSP 1 Score: 68.6 bits (166), Expect = 9.450e-11
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 0
Query:  121 GEWSSENEAMCAICLCEEEDGQSLRVLPCGHFFHASCVDVWLSQSPTCPFCKQAVE 176
            G+ + +N   C ICLCE E+G+ +R LPC H FH SCVD WL+    CP C+  +E
Sbjct:   46 GDSNEDNTEKCTICLCEFEEGEDVRRLPCMHLFHVSCVDQWLTTVKFCPLCRVDIE 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15362.3538.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6J3_ECTSI2.380e-5653.36Similar to ring finger protein 167 isoform 1 n=1 T... [more]
A0A6H5JXB7_9PHAE1.330e-5454.55RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7R9YZI2_9CHLO2.960e-1337.57Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7R9VJC0_9CHLO3.740e-1337.57Hypothetical protein n=2 Tax=Chlamydomonas euryale... [more]
A0A5J4YP56_PORPP5.310e-1345.83E3 ubiquitin protein ligase RIE1 n=1 Tax=Porphyrid... [more]
UPI0019D64F634.220e-1249.35RING-H2 finger protein ATL8-like n=1 Tax=Panicum v... [more]
R7TSL4_CAPTE3.080e-1155.10RING-type domain-containing protein (Fragment) n=1... [more]
A0A1Y1VZL6_9FUNG3.160e-1153.97RING-type domain-containing protein n=1 Tax=Linder... [more]
A0A7S0PRV2_MICPS4.030e-1142.31Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
E9H728_DAPPU9.450e-1148.21RING-type domain-containing protein (Fragment) n=3... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 130..172
e-value: 0.0034
score: 11.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 131..171
e-value: 2.0E-8
score: 44.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 130..172
e-value: 2.8E-13
score: 50.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 131..172
score: 12.77
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 116..178
e-value: 8.8E-19
score: 68.5
NoneNo IPR availablePANTHERPTHR45977FAMILY NOT NAMEDcoord: 119..175
NoneNo IPR availablePANTHERPTHR45977:SF4TARGET OF ERK KINASE MPK-1coord: 119..175
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..383
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..24
score: 0.511
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 122..178
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
IPR011767Glutaredoxin active sitePROSITEPS00195GLUTAREDOXIN_1coord: 162..178

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15362contigH-elongata_contig15362:2783..4530 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15362.3538.1mRNA_H-elongata_contig15362.3538.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15362 211..5939 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15362.3538.1 ID=prot_H-elongata_contig15362.3538.1|Name=mRNA_H-elongata_contig15362.3538.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=384bp
MSGTFLFNSTLILLGFVWCGVTFARLVCVHRARENNAFLQERGTFATGFG
ARIGAGGGVDGAGSGPAPVGLTAAQIETLEQTSVVPSKRNFGLKGAHGSA
AAADSRVVGDLEARGGEGEKGEWSSENEAMCAICLCEEEDGQSLRVLPCG
HFFHASCVDVWLSQSPTCPFCKQAVEVLPPDGRGKSVAARVGASVARVRN
VPRWLMRSNGSLDGDANASAPPDPESAVGIPAGAGGNSEEGTGVGARAGP
ASVTPVVAEDDAEIGAATATVALVSEQGGSTRNPAVVLAPFGGLYCESPG
AGREAPPTLPVGRFEGEGNESNGLQSVMEGKEDGDSGETEESGGVNMEAV
GVGGGGEETSPIGDGEMQEGSGGDMGQWYSRES*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR011767GLR_AS