prot_H-elongata_contig152740.3485.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig152740.3485.1
Unique Name	prot_H-elongata_contig152740.3485.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	107

Homology

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BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A6H5JJW9_9PHAE (Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJW9_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.770e-52
Identity = 80/104 (76.92%), Postives = 92/104 (88.46%), Query Frame = 0

Query:    1 KPSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEAAGGKLAEY 104
            KP VL+DGNF PPGL  + V+AECV+GGD  EYCIAAASIIAKVTRDRLMIE+G+ WP+FGFE HKGYGT AH DA+R+HGMV+IHRRSFLK ME++GGKLAEY
Sbjct:  243 KPFVLVDGNFTPPGLGDAKVEAECVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVFGFERHKGYGTAAHRDAIREHGMVEIHRRSFLKNMESSGGKLAEY 346

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BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: D8RCY3_SELML (Ribonuclease (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RCY3_SELML)

HSP 1 Score: 108 bits (270), Expect = 1.640e-27
Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = 0

Query:    2 PSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSF 90
            P +LIDGN +P GL  SG  A  V+ GD+  + IAAASI+AKVTRDRLM +Y K WP++GF++HKGYGT +H  AL +HG  DIHRRSF
Sbjct:   99 PYILIDGNRIPGGL--SGKHARSVVKGDAESHVIAAASILAKVTRDRLMEDYDKRWPLYGFKDHKGYGTASHTAALLKHGPCDIHRRSF 185

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BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A836CIH6_9STRA (Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 5.340e-26
Identity = 54/90 (60.00%), Postives = 64/90 (71.11%), Query Frame = 0

Query:    1 KPSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSF 90
            K +VLIDGN VP  +    + AEC+I GD  EY IAAASIIAKVTRDRLM +Y + +P +GFE HKGYGT AH  A+ QHG   IHR +F
Sbjct:  118 KAAVLIDGNRVPDNME---LPAECIIKGDGKEYSIAAASIIAKVTRDRLMRQYHEQYPAYGFERHKGYGTAAHMAAIAQHGACPIHRMTF 204

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BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A1F5B153_9BACT (Ribonuclease HII n=1 Tax=Candidatus Azambacteria bacterium RBG_16_47_10 TaxID=1797292 RepID=A0A1F5B153_9BACT)

HSP 1 Score: 102 bits (254), Expect = 5.070e-25
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 0

Query:    1 KPSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEAAGGK 100
            +P + IDG  + P ++   VD + VIGGD+  + IAAASIIAKVTRDR+M  Y K +P + FE HKGYGT+ H+ A+R+HG   IHR+SFLK +   G K
Sbjct:  105 QPYLYIDGRDIIPDMS---VDQKAVIGGDAIVFSIAAASIIAKVTRDRMMGVYAKEYPQYQFEQHKGYGTKLHYAAMREHGPCPIHRKSFLKSVIDKGAK 201

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BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: UPI0019AD1CA9 (ribonuclease HII n=1 Tax=Clostridiaceae bacterium NSJ-31 TaxID=2763658 RepID=UPI0019AD1CA9)

HSP 1 Score: 102 bits (254), Expect = 5.070e-25
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = 0

Query:    3 SVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEA 96
            +V IDGN +P      G+ AECV+GGD++   IAAASI+AKV+RDR M    + +P + FE HKGYGT+ H+  L Q+GM  IHRRSFLKK EA
Sbjct:  111 AVYIDGNQMPDL---GGLKAECVVGGDASSASIAAASILAKVSRDRYMARMAEQYPQYQFERHKGYGTKLHYQMLEQYGMSPIHRRSFLKKWEA 201

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BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: W4GYY1_9STRA (Ribonuclease (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYY1_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.820e-25
Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 0

Query:    5 LIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSF 90
            LIDGN +PP      +  ECVI GDS  Y IAAASIIAKVTRDRLM+ Y K WP +GF  HKGYGTR H  A+ +HG   IHR +F
Sbjct:  193 LIDGNKMPP----LSIQGECVIKGDSKVYAIAAASIIAKVTRDRLMVVYDKQWPEYGFAQHKGYGTRMHMAAIHKHGATPIHRMTF 274

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BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A1C6GIU2_9FIRM (Ribonuclease HII n=3 Tax=Oscillospiraceae TaxID=216572 RepID=A0A1C6GIU2_9FIRM)

HSP 1 Score: 101 bits (252), Expect = 1.010e-24
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 0

Query:    5 LIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKM 94
            LIDGN  PP    + V  + VIGGD     IAAASI+AKVTRDRLM+E    +P +GFE HKGYGT+AH+ A+ Q G+  +HRRSFLKK+
Sbjct:  115 LIDGNRCPP----APVPCQWVIGGDGKSASIAAASILAKVTRDRLMVEAAATYPGYGFERHKGYGTKAHYAAIAQLGLTPLHRRSFLKKV 200

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BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: UPI00164AA199 (ribonuclease HII n=1 Tax=Anaerofilum sp. BX8 TaxID=2763016 RepID=UPI00164AA199)

HSP 1 Score: 101 bits (251), Expect = 1.360e-24
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 0

Query:    4 VLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKK 93
            VLIDGN  P GL   G+ A  V+ GD+T  CIAAAS++AKVTRDR M E G+ +P + FE HKGY T+ H++ + Q+G+ D +R+SFLKK
Sbjct:  111 VLIDGNRCPEGL---GMPARAVVKGDATSACIAAASVLAKVTRDRYMTELGRRYPQYQFEKHKGYPTKLHYELIAQYGIQDFYRKSFLKK 197

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BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A3C1CUE3_9FIRM (Ribonuclease HII n=6 Tax=Eubacteriales TaxID=186802 RepID=A0A3C1CUE3_9FIRM)

HSP 1 Score: 100 bits (250), Expect = 1.790e-24
Identity = 45/90 (50.00%), Postives = 66/90 (73.33%), Query Frame = 0

Query:    5 LIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKM 94
            +IDGN +PP      +DAEC++ GD+    IA ASI+AKV+RDRL+ +Y + +PM+GF+ HKGYGT+ H +A+ ++G    HR+SFLKK+
Sbjct:  111 MIDGNKIPP----IDIDAECIVKGDAKSMSIACASILAKVSRDRLLYKYAEEYPMYGFDKHKGYGTKVHREAILKYGPCPYHRKSFLKKL 196

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BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Match: A0A6I2JCG2_9GAMM (Ribonuclease HII n=26 Tax=Moraxellaceae TaxID=468 RepID=A0A6I2JCG2_9GAMM)

HSP 1 Score: 100 bits (249), Expect = 2.030e-24
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 0

Query:    4 VLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLMIEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEAAG 98
            VL+DGN VP GL+   +  + V+GGD+    I+AASI+AKVTRD  M+E  K +P FGF  HKGY T+AH DA+ +HG++D HRRS+    +A G
Sbjct:   96 VLVDGNKVPKGLS---MSCDAVVGGDALHAEISAASILAKVTRDHEMVELDKLYPQFGFAKHKGYPTKAHFDAIAEHGVIDQHRRSYSPVKKALG 187

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot

BLAST of mRNA_H-elongata_contig152740.3485.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JJW9_9PHAE	2.770e-52	76.92	Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D8RCY3_SELML	1.640e-27	60.67	Ribonuclease (Fragment) n=5 Tax=Selaginella moelle...	[more]
A0A836CIH6_9STRA	5.340e-26	60.00	Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 ...	[more]
A0A1F5B153_9BACT	5.070e-25	52.00	Ribonuclease HII n=1 Tax=Candidatus Azambacteria b...	[more]
UPI0019AD1CA9	5.070e-25	55.32	ribonuclease HII n=1 Tax=Clostridiaceae bacterium ...	[more]
W4GYY1_9STRA	6.820e-25	60.47	Ribonuclease (Fragment) n=3 Tax=Aphanomyces astaci...	[more]
A0A1C6GIU2_9FIRM	1.010e-24	57.78	Ribonuclease HII n=3 Tax=Oscillospiraceae TaxID=21...	[more]
UPI00164AA199	1.360e-24	54.44	ribonuclease HII n=1 Tax=Anaerofilum sp. BX8 TaxID...	[more]
A0A3C1CUE3_9FIRM	1.790e-24	50.00	Ribonuclease HII n=6 Tax=Eubacteriales TaxID=18680...	[more]
A0A6I2JCG2_9GAMM	2.030e-24	51.58	Ribonuclease HII n=26 Tax=Moraxellaceae TaxID=468 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024567	Ribonuclease HII/HIII domain	PFAM	PF01351	RNase_HII	coord: 27..91 e-value: 1.1E-13 score: 51.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..104 e-value: 5.1E-32 score: 113.2
IPR001352	Ribonuclease HII/HIII	PANTHER	PTHR10954	RIBONUCLEASE H2 SUBUNIT A	coord: 3..97
IPR022898	Ribonuclease HII	PANTHER	PTHR10954:SF18	RIBONUCLEASE HII	coord: 3..97
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 4..91

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig152740	contig	H-elongata_contig152740:270..1061 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig152740.3485.1	mRNA_H-elongata_contig152740.3485.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig152740 270..1061 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig152740.3485.1 ID=prot_H-elongata_contig152740.3485.1|Name=mRNA_H-elongata_contig152740.3485.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
KPSVLIDGNFVPPGLAGSGVDAECVIGGDSTEYCIAAASIIAKVTRDRLM
IEYGKCWPMFGFENHKGYGTRAHHDALRQHGMVDIHRRSFLKKMEAAGGK
LAEYSG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024567	RNase_HII/HIII_dom
IPR036397	RNaseH_sf
IPR001352	RNase_HII/HIII
IPR022898	RNase_HII
IPR012337	RNaseH-like_sf