prot_H-elongata_contig15156.3412.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15156.3412.1
Unique Nameprot_H-elongata_contig15156.3412.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length828
Homology
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BLAST of mRNA_H-elongata_contig15156.3412.1 vs. uniprot
Match: D7FIA5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIA5_ECTSI)

HSP 1 Score: 383 bits (984), Expect = 7.730e-118
Identity = 317/618 (51.29%), Postives = 368/618 (59.55%), Query Frame = 0 
Query:   63 WSQALALHDAFFELASNLLTLRLAASEEWGENPVPAVDGGADDLHGALLMRTPRRLQLLSEVVPGWEEVCQAALEACRRGGDWERALEVLNTLRGGGGGAKLSGEAYEEAIAACGSGEAWNMVLLLVAEMRSDEITPKPAAIETALKARDRRYSPPTMACAATGSWTWARSLLR--SIASNRADGTPLNLRHYLKALEACETVVDKPGGPQAQGAAKAALELLQDLREARWLIGRRGEDAYMHAMKACVAGQDAWSALALLESAEDDGVRRSTVLRTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHPQNESTRSAAYCGAIAACAECGHWEGATSLLQRMREDTLVVVTNRAFKAAIAACCRAQQSVAALTLLGDMSLAGSRSRGDRCDARDVTVRPDEPAYLLVMRAFGREGRWHTVMDLLRSMREEAGLEASVSAXXXXXXXXXXXXXXXXXXXXXXXXKRENVRPTEFTYTKCMIACEXXXXXXXXXXXXXXXKDQGDLVPDCYVCSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VRDWKRMLEELDRMRWEEVTPEETTFLIPLD 677
            W QAL L++ F ELA  L   R   S      P+     G  D+    L+R  ++L  L EV PGWE+VCQAALEAC  GG WE AL+VL+ LR GGGGA+LS  AY EAI  CG G AW+MVLLLVAEM SDEI    A  ETALK            CAATG+W+WA SLLR  S ++N  +G PLN  HYL AL +C  VVDKPGGP+AQ AAKAAL LLQD+RE  WL+G++GED    AMK   A +DAW ALALL+  +DDG+ RS +LRT A                                                          HP++E T +AA                     QRMR+D+L VVT+R + AAI ACCRAQQSVAALTLLGDMS+       + C A       DE +Y+LVMRAFGREGRW TV+DL+ S++EEAGL  +VS+XXXXXXXXXXXXXXXXXXXXXXXX +E VRPTEFT         XXXXXXXXXXXXXXXK+Q DLVPD       XXXXXXXXXXXXXXXXXXXXXX                      RDW RMLEE+DRMR E++ PEE+TF  PLD
Sbjct:   11 WRQALPLYEGFLELA--LEQARATTS------PLEETQAGRADVVPVPLLRQRQQLHRLKEVAPGWEDVCQAALEACNIGGQWEAALKVLSVLRAGGGGAELSEAAYTEAIEVCGKGRAWDMVLLLVAEMSSDEIPMTAATFETALKG-----------CAATGAWSWALSLLRCMSTSTNGPNGIPLNAAHYLDALRSCAGVVDKPGGPKAQAAAKAALGLLQDVRENGWLVGQQGEDLVYCAMKTQAAARDAWGALALLD--QDDGLPRSVMLRTGAMQACSGAGEWRAALSILEDMQAEGLRPNGAAYVAAMEACARGGVMDLALELLDRVLMFHPRDERTVTAAXXXXXXXXXXXXXXXXXXXXXQRMRQDSLAVVTSREYNAAIMACCRAQQSVAALTLLGDMSV-----ESEHCSA-------DETSYVLVMRAFGREGRWRTVIDLMGSLKEEAGLVPTVSSXXXXXXXXXXXXXXXXXXXXXXXXXQERVRPTEFTXXXXXXXXXXXXXXXXXXXXXXXXKEQEDLVPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSATSGPNLVLYNIAIGSCARARDWPRMLEEMDRMRREDIEPEESTFAAPLD 595
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15156.3412.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIA5_ECTSI7.730e-11851.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 677..826
e-value: 9.6E-27
score: 96.1
coord: 220..404
e-value: 4.9E-19
score: 70.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 571..676
e-value: 1.3E-20
score: 75.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 405..558
e-value: 1.1E-18
score: 69.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 526..569
e-value: 1.0E-8
score: 35.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 584..644
e-value: 0.001
score: 19.1
coord: 691..743
e-value: 5.1E-4
score: 20.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 494..524
e-value: 6.7E-4
score: 17.7
coord: 563..598
e-value: 8.8E-4
score: 17.3
coord: 599..632
e-value: 0.0014
score: 16.7
coord: 529..562
e-value: 1.4E-6
score: 26.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 409..435
e-value: 0.12
score: 12.7
coord: 782..804
e-value: 1.1
score: 9.6
coord: 494..519
e-value: 0.067
score: 13.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 526..560
score: 12.222
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 597..627
score: 8.298
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 633..667
score: 8.966
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 738..772
score: 6.906
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 367..397
score: 6.127
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 332..366
score: 8.079
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 490..520
score: 8.539
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 128..162
score: 5.875
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 165..199
score: 6.325
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 668..702
score: 9.328
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 773..807
score: 8.605
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 561..595
score: 8.473
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 297..331
score: 5.163
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 6..40
score: 6.807
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 441..475
score: 6.456
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 703..737
score: 9.504
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 405..439
score: 7.914
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 603..818
coord: 301..395
coord: 370..625
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..827
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15156contigH-elongata_contig15156:185..6470 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15156.3412.1mRNA_H-elongata_contig15156.3412.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15156 185..6470 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15156.3412.1 ID=prot_H-elongata_contig15156.3412.1|Name=mRNA_H-elongata_contig15156.3412.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=828bp
RGIEINRSVYAAVVLACAHSGEAARTLFLVKDAAKRGMPLLPSDIAAAMR
ELMAGSPPLVARWSQALALHDAFFELASNLLTLRLAASEEWGENPVPAVD
GGADDLHGALLMRTPRRLQLLSEVVPGWEEVCQAALEACRRGGDWERALE
VLNTLRGGGGGAKLSGEAYEEAIAACGSGEAWNMVLLLVAEMRSDEITPK
PAAIETALKARDRRYSPPTMACAATGSWTWARSLLRSIASNRADGTPLNL
RHYLKALEACETVVDKPGGPQAQGAAKAALELLQDLREARWLIGRRGEDA
YMHAMKACVAGQDAWSALALLESAEDDGVRRSTVLRTAAMQACSGAGEWR
AALSILEDVLAEGLLPGGEAYEAAMAACARGGVVDLAFELLDRVLAEHPQ
NESTRSAAYCGAIAACAECGHWEGATSLLQRMREDTLVVVTNRAFKAAIA
ACCRAQQSVAALTLLGDMSLAGSRSRGDRCDARDVTVRPDEPAYLLVMRA
FGREGRWHTVMDLLRSMREEAGLEASVSAYNVVVEALAKAGEWQRSLKVL
EEMKRENVRPTEFTYTKCMIACEKSGQWEETLSLMSDMKDQGDLVPDCYV
CSTAMMACSRAGRLDDVLGILQEMRDMPGEGPNMVNYNIAIGACARVRDW
KRMLEELDRMRWEEVTPEETTFLIPLDICGRSGALSIALELLSRMREDGV
RPGVVAYGASVAAACRAGEARTAARLLDEMEAAGHPPNEVTYGVAALACR
DGANADAAVELVARCQERDLPPDPLIVSFAVQACARAGDMERGLTLISSM
KLAGLDPDCSFYTGVIAGISSSLVEEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat