prot_H-elongata_contig151266.3399.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig151266.3399.1
Unique Nameprot_H-elongata_contig151266.3399.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length78
Homology
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A6H5JR04_9PHAE (Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR04_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.050e-33
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQKPGRVKDGGRGRGRGM 60
            +VTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDD PKQKPG+VKDG RGRGRGM
Sbjct:   44 KVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRGM 103          
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A7S2FU32_9STRA (Small nuclear ribonucleoprotein Sm D1 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU32_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.450e-19
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQKPGRVKDGGRGRGRG 59
            +VT KGKN   YD+LSIRGNNIR Y+LPD++NLD LLIDD PKQK  +V  GGRG GRG
Sbjct:   65 KVTVKGKNTVNYDTLSIRGNNIRYYLLPDSINLDALLIDDAPKQKAPKVAAGGRGPGRG 123          
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A835YYQ8_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.850e-19
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQKPGRVKDG 52
            +VTPKG+N    D+LSIRGNNIRCYILPDN+NLDQLLIDD PK KPG  K G
Sbjct:   44 KVTPKGRNTQDCDTLSIRGNNIRCYILPDNINLDQLLIDDAPKAKPGIPKAG 95          
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: T0RK40_SAPDV (Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=T0RK40_SAPDV)

HSP 1 Score: 83.6 bits (205), Expect = 4.370e-19
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQK 45
            ++T KGKNPT+ DSLSIRGNNIRCYILPD+LNLD LLIDDTPKQK
Sbjct:   44 KMTVKGKNPTSLDSLSIRGNNIRCYILPDSLNLDTLLIDDTPKQK 88          
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A7S2SJR6_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJR6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.280e-18
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQKPGRVKDG 52
            ++T KGKN   YDSLSIRGNNIR YILPDNLNLD LLIDDTPK KP +V+ G
Sbjct:   66 KLTVKGKNTVHYDSLSIRGNNIRYYILPDNLNLDTLLIDDTPKAKPPKVQTG 117          
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A482SBF9_9ARCH (Sm domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBF9_9ARCH)

HSP 1 Score: 77.8 bits (190), Expect = 2.450e-17
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQKPGRVKD---GGRGRGR 58
            +VT KGKNP  +D LSIRGNNIR YILPD+LNLD LL+DDTPK    R++    GGRG GR
Sbjct:    9 KVTLKGKNPVHHDFLSIRGNNIRYYILPDSLNLDTLLVDDTPKHAVSRIQPKQTGGRGGGR 69          
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: K3WSY3_GLOUD (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSY3_GLOUD)

HSP 1 Score: 79.0 bits (193), Expect = 4.920e-17
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQK--PGRVKDGGRGRG 57
            ++T KGKNP + DSLSIRGNNIR YILPD+LNLD LLI+DTP++K   G    GGRGRG
Sbjct:   44 KMTVKGKNPVSLDSLSIRGNNIRYYILPDSLNLDTLLIEDTPREKVKAGAPAAGGRGRG 102          
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A7R9W4G1_9STRA (Small nuclear ribonucleoprotein Sm D1 (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4G1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.120e-17
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQ--KPGRVKDGGRGRGRG 59
            +VT +GKNP ++ +LS+RG+ +RC+ILPD+LNLD LL+DDTPKQ  K G    GG GRGRG
Sbjct:   63 KVTVRGKNPVSHATLSVRGSTVRCWILPDSLNLDALLVDDTPKQVQKAGTQAPGGMGRGRG 123          
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A7S2V5U0_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5U0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.610e-17
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQK--PGRVKDGGRG 55
            ++T K KNP + ++LSIRGNNIR Y+LPDNLNLD LLIDDTPKQK  PG    GGRG
Sbjct:   44 KMTVKQKNPVSLETLSIRGNNIRYYLLPDNLNLDTLLIDDTPKQKVRPGVAMRGGRG 100          
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Match: A0A024TLD1_9STRA (Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLD1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 9.110e-17
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQK 45
            ++T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK
Sbjct:   44 KMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK 88          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151266.3399.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR04_9PHAE1.050e-3393.33Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ecto... [more]
A0A7S2FU32_9STRA1.450e-1969.49Small nuclear ribonucleoprotein Sm D1 (Fragment) n... [more]
A0A835YYQ8_9STRA1.850e-1975.00Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Trib... [more]
T0RK40_SAPDV4.370e-1984.44Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Sapr... [more]
A0A7S2SJR6_9STRA3.280e-1875.00Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhiz... [more]
A0A482SBF9_9ARCH2.450e-1765.57Sm domain-containing protein (Fragment) n=1 Tax=ar... [more]
K3WSY3_GLOUD4.920e-1767.80Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Glob... [more]
A0A7R9W4G1_9STRA7.120e-1760.66Small nuclear ribonucleoprotein Sm D1 (Fragment) n... [more]
A0A7S2V5U0_9STRA7.610e-1768.42Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibr... [more]
A0A024TLD1_9STRA9.110e-1780.00Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Apha... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..42
e-value: 1.0E-10
score: 43.0
NoneNo IPR availablePANTHERPTHR23338:SF18SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1coord: 2..74
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 2..74
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151266contigH-elongata_contig151266:99..332 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151266.3399.1mRNA_H-elongata_contig151266.3399.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig151266 99..332 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig151266.3399.1 ID=prot_H-elongata_contig151266.3399.1|Name=mRNA_H-elongata_contig151266.3399.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
QVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDTPKQKPGRVK
DGGRGRGRGMRGRGRGMRGSGRGRGRL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027141LSm4/Sm_D1/D3
IPR010920LSM_dom_sf