prot_H-elongata_contig15108.3395.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15108.3395.1
Unique Nameprot_H-elongata_contig15108.3395.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length547
Homology
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BLAST of mRNA_H-elongata_contig15108.3395.1 vs. uniprot
Match: D7FU82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU82_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 7.210e-45
Identity = 76/102 (74.51%), Postives = 90/102 (88.24%), Query Frame = 0 
Query:  380 VGAAASIGSGVENPQLKLAGEVTFESKTGITYIGKVVAIDPTPKSNAPRGIVRVKYDDWPYDRYDEDISMELVTPKGWLPTALGRAGRRASKPVKTFTPSLE 481
            VGA+AS+GSGVENPQLKLAG VTF++K+GITY G+VVAIDP P   +PRG+VRVKYDDWPYD+YDED+S E+VTP GW+PT +GRAGRRASKP  TFTPS +
Sbjct:   50 VGASASVGSGVENPQLKLAGLVTFQNKSGITYKGRVVAIDPRPFPGSPRGVVRVKYDDWPYDKYDEDVSTEMVTPFGWVPTPVGRAGRRASKPPPTFTPSTD 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15108.3395.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU82_ECTSI7.210e-4574.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 523..543

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15108contigH-elongata_contig15108:4216..7237 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15108.3395.1mRNA_H-elongata_contig15108.3395.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15108 4216..7237 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15108.3395.1 ID=prot_H-elongata_contig15108.3395.1|Name=mRNA_H-elongata_contig15108.3395.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=547bp
GAATVTQGFPRSCLLANCYLKKPKLFNNVDEYTKHVLKCMHQDDRRKAAA
SFAMDRSASPRRQSNRITTVPLRVCLDHEIPARAKSVDVRDTLSGVGGDG
CNSKTRYAEVPSSDASTISDGDDTNGGIVSVSGSSSGNGSESAQQRRNVE
SSSASNGIISNGSRNGSGSGSRGRLQWSPAISGGTSGLEDDVTGYTAAGR
PTRKLSGRLSAGRAGDGGGSSGSGSAVATGAASQRPRASSLTMAARGRAS
TAGGSGSGGARKGRATSGQGGTVSIERPTGARARVSGDPSPGVEIGSSRG
LSVDNSEKEAEGVISVATLSSRAQLATWRGSLGLWGPGGGFTCPVNPLEE
WDLPGCGRESRARDMKCDSCQRVLRVDWHVGAAASIGSGVENPQLKLAGE
VTFESKTGITYIGKVVAIDPTPKSNAPRGIVRVKYDDWPYDRYDEDISME
LVTPKGWLPTALGRAGRRASKPVKTFTPSLEPCYKRRSMSVVEALELYRS
RFGDGDGSGEGLDTSEGVVDDEIDEFEGKVKEEEKEEEEEEEEEEAP
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