prot_H-elongata_contig15066.3377.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15066.3377.1
Unique Nameprot_H-elongata_contig15066.3377.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length637
Homology
BLAST of mRNA_H-elongata_contig15066.3377.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 3.160e-41
Identity = 125/433 (28.87%), Postives = 198/433 (45.73%), Query Frame = 0
Query:   87 IPPSWRLALVVLDAVRDGVNAVEAARYYMNQEDPLSLESNGKR---SWVSLKELQLHWTHVLDSLKDDLWAKLLPDDREFALQSVMDMRERGGSLLKHP--EVVFLDVEDFALSLVPILNHKTQQRDGGGTCLFAGRQLKEQWQFDAKEKLVSKGILERRFAEFLWKNDFGALPHQA-------FDVLVKIGILLPLPLQIHTPGDHRFLQRACGNTTYCRHVKEYLVLMRLPQNAPSETMGRFNAFNNLQADWGVVAEWEFTLGRTPHGLVERLVASCHSIGNVVRNTCWRRGACFVAHEAAINLAGGSFALSLQFTQSSTSNLQTAGTLVVKAFGYREGHAVWGALRFVISTAWNIFQEFRGLAWQARVMCPKHEGTTLHFLAGVNDIKGRSPGAPIVQPGAIQHCGCQEEVASRLRTVLPPSSPLENVFK 507
            +PP+W LAL V+ A+R   N + AAR  +   +PL  +        +++S  EL   W  V+D+L+DD+ A ++  + E AL+  + + +  G  L+    + +FLDV   +  L PIL+HK + +       F  R L   W    ++ L   GIL R FA  +W+   G +  ++       F VL+K+G+ LP+  +       R    A  + +      + LV+MRL +         F+   +      V  +WEF     P+GL+ERL+ASCH +G V    CWR GA F +H+  +    G      +   S TS  ++      K FG  +   VW A+R+V S   N+ +E+ G+ W   + C KH    L+  + V    G  P  P   P A + C C  E    LR  +    P+ +  K
Sbjct:  274 VPPAWDLALEVIGALRASCNPIAAARDKLGLPNPLPADGVADVHAFAFISKDELSRKWRSVVDNLRDDVPAAMI-SNWESALEGALWISDFAGHTLRVDGGDGIFLDVLWLSKCLSPILSHKLKNQP------FENRWL---WM---RDDLAGDGILRREFALHIWRESVGEVVMESEEVAEALFSVLIKLGVALPMGRRTLLAHSDRSTPTAPSDVS---GSNDMLVIMRLSETCNEHQRTLFDGLASKMPRDRVTLKWEFDKAGPPYGLIERLIASCHVLGEVETGACWRYGAVFQSHD--MRFVEGRNVRFYKIALSMTSYNESERVFTAKVFGPLDSERVWVAIRYVASAMINLSKEWPGVLWTGWLDCEKHPSQHLYMASSVEARVG-DPLLPAAAPDA-RRCDCLLEPGGVLRLAVEELGPVIDTGK 686          
BLAST of mRNA_H-elongata_contig15066.3377.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.930e-33
Identity = 135/497 (27.16%), Postives = 221/497 (44.47%), Query Frame = 0
Query:   21 VEDSVMKRHNQWKNEQLKNEHTAIVENLTVECGIPLISSSPTCYCENGLADLQDRLKKCGKGTRWLIPPSWRLALVVLDAVRDGVNAVEAARYYMNQEDPLSLESNGKRSWVSLKELQLHWTHVLDSLKDDLWA---KLLPDDREFALQSVMDMRERGGSLLK--HPEVVFLDVEDFALSLVPILNHKTQQRDGGGTCLFAGRQLKEQWQFDAKEKLVSKGILERRFAEFLWKNDFGALPHQAF-----DVLVKIGILLPLPLQI-HTPGDHRFLQRACGNTTYCRHVKEYLVLMRLPQNAPSETMGRFNAF-NNLQADWG---VVAEWEFTLGRTPHGLVERLVASCHSIGNVVRNTCWRRGACFVAHEAAINLAGGS---FALSLQFTQSSTSNLQTAGTLVVKAFGYREGHAVWGALRFVISTAWNIFQEFRGLAWQARVMCPKHEGTTLHFLAGVNDIKGRSPGAPIVQPG---AIQHCGCQEEVASRLRTVL 496
            VE S  ++  +W+     N  +  V  LT+     L+S    C    GL+++  R+   G  T  ++PPSW LAL  LDA+RD  +   A R +++ +    + +    S+++   L   W   + S+  +L +   ++   D   A++  + + E  G +L+  H +V+FLDV   + +L PIL+HK +         F   +L        K++LV  G+L  +FAE+LW  +  A P +        VL  +G+ LPL  +  HT      +  A  +    R  ++ LV+MRLP        G       +L    G   V  +W F      HGLVER++ASCH +G+V    CWR GA F ++  A +  GG    ++  +++ +   S  +    L V  FG      +W ALR+V S+  N    + G+ W+    C  H    ++F      I+ R     +  P    A   C C     + +R VL
Sbjct:  524 VESSARRQLQEWQG----NRKSPGVTKLTILQQPSLVS----CDDGGGLSEVIARVDAQG-ATSIVVPPSWGLALAFLDALRDSRDPEPATRRFLHLDFDAEVGAAQGSSFMTESTLFQRWNDTVKSVAGELTSPAERMAVSDHHGAMEGALWISEFAGHILRVAHSDVIFLDVVWLSAALKPILSHKLESH------FFPRSELTAM-----KDELVDNGVLRLKFAEYLWDLEMEAPPSEEVMDALCGVLHSLGVALPLGREERHTASA---IDPAAAHGQIGR--QDMLVIMRLPDTCEENIQGELQELVRDLSERHGGNEVTLKWRFDGAGASHGLVERVIASCHEVGSVRSGLCWRYGAVFQSYARADD--GGLNWLYSFVIRYDEEVGSGERV---LAVTMFGPTAEDRLWAALRWVASSVVNTSTGWPGVRWEGGPACAIHARGRMYFKT---PIEARIGDPILTDPDPRTAPNVCDCYTTEGNAMRLVL 987          
BLAST of mRNA_H-elongata_contig15066.3377.1 vs. uniprot
Match: A0A6H5JME6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME6_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.180e-14
Identity = 95/393 (24.17%), Postives = 157/393 (39.95%), Query Frame = 0
Query:   81 KGTRWLIPPSWRLALVVLDAV---------------RDGVNAVEAARYYMNQEDPLSLESNGKRSWVSLKELQLHWTHVLDSLKDDLWAKLLPDDREFALQSVMDMRERGGSLLKHPEVVFLDVEDFALSLVPILNHKTQQRDGGGTCL------FAGRQLKEQWQFDAKEKLVSKGILERRFAEFLWKNDFGALPHQAFDVLVKIGILLPLPLQIHTPGDHRFLQRACGNTTYCRHVKEYLVLMRLPQNAPSETMGRFNAFN-NLQADWGVVAEWEFTLGRTPHGLVERLVASCHSIGNVVRNTCWRRGACFVAHEAAINLAGGSFALSLQFTQSSTSNLQTAGTLVVKAFGYREGHAVWGALRFVISTAWNIFQEFRGLAWQARVMCPKHE 451
            +G   ++P SW +ALVVLDA+               R G  A    R    + DP +  + G      ++E++   +       +        + R    +  ++  +  GSL++H   VFLDV   A  L P+LNH+  +   G   L        G + K  WQ     +    G+L+   A  LW  D   L       L  +G+             H+   R  G           +VL+RL +  P+      + F  + +A + V   W+ ++G  P G VE+++  C SIG +   T WR G     +   +  AG +FA+ ++++   +        + +K +G     A W AL   IS    +   F GL W A + CP+H+
Sbjct:  614 RGAALVLPRSWNIALVVLDALGNGRQGSRRFGARDGRRGGRATGTRRGDCREIDPAARWNRGYNMGRPIREMERRRSSSEGRRSNS------HEPRPRLGRGALNQAQYEGSLVRHETYVFLDVTWLAKILKPLLNHREDEDFFGSLSLGDTGITLDGHKDKVSWQ-----RFKQTGVLKPELAGLLWPGD---LCDYVLRTLESLGLA------------HQLDDRFAGGL---------VVLLRLGKERPASVGKELDDFRRDHEAIFSVT--WKISMG-VPPGAVEKVLTRCCSIGEL--RTFWRFGVLVQGNMGGVT-AGKTFAMLVEYSHKGSE-------IDIKVYGNIATTAPWAALSLGISAVRVMCSAFPGLRWCASLKCPEHK 958          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15066.3377.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE3.160e-4128.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVX5_ECTSI1.930e-3327.16LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JME6_9PHAE1.180e-1424.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..594
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 595..617
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 618..636
NoneNo IPR availableTMHMMTMhelixcoord: 595..617

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15066contigH-elongata_contig15066:1536..5120 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15066.3377.1mRNA_H-elongata_contig15066.3377.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15066 7..5232 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15066.3377.1 ID=prot_H-elongata_contig15066.3377.1|Name=mRNA_H-elongata_contig15066.3377.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=637bp
MTKSLAWLRRSRSIEAILKDVEDSVMKRHNQWKNEQLKNEHTAIVENLTV
ECGIPLISSSPTCYCENGLADLQDRLKKCGKGTRWLIPPSWRLALVVLDA
VRDGVNAVEAARYYMNQEDPLSLESNGKRSWVSLKELQLHWTHVLDSLKD
DLWAKLLPDDREFALQSVMDMRERGGSLLKHPEVVFLDVEDFALSLVPIL
NHKTQQRDGGGTCLFAGRQLKEQWQFDAKEKLVSKGILERRFAEFLWKND
FGALPHQAFDVLVKIGILLPLPLQIHTPGDHRFLQRACGNTTYCRHVKEY
LVLMRLPQNAPSETMGRFNAFNNLQADWGVVAEWEFTLGRTPHGLVERLV
ASCHSIGNVVRNTCWRRGACFVAHEAAINLAGGSFALSLQFTQSSTSNLQ
TAGTLVVKAFGYREGHAVWGALRFVISTAWNIFQEFRGLAWQARVMCPKH
EGTTLHFLAGVNDIKGRSPGAPIVQPGAIQHCGCQEEVASRLRTVLPPSS
PLENVFKAESRERGHESLDEDGEKQFMAALDNALNVTAEQDPIVDESMKS
GGWRTPEWVKDAVLAGPLGAITYYNSWAPLFKVADHWRDGAYTKAIPLTL
FALVMAMAVAGAVAAGFRKLRQTYRWWLPRASAKND*
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