prot_H-elongata_contig14983.3336.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14983.3336.1
Unique Nameprot_H-elongata_contig14983.3336.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length723
Homology
BLAST of mRNA_H-elongata_contig14983.3336.1 vs. uniprot
Match: D7G1A2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1A2_ECTSI)

HSP 1 Score: 539 bits (1389), Expect = 8.050e-178
Identity = 415/884 (46.95%), Postives = 476/884 (53.85%), Query Frame = 0
Query:    4 QMPPSLVALFAHVMSRANEGIRGSGSRAHSWEEVLQPATS-----------------AGSTSPGPF-PMSAQDWRKAEAFSVQLQSLLATRQSRCISNGHSRAAGHYANGVASTCSSDAEAAMAHFDETVASYTNSYNH-SVASSAVK--------------SIPHANGKIKGKTKSTAMHPNYAGASDAPPAAASTASPHPAAVFPRHHAPRVTPKEPCRAG---EPSAPTKVVGRVAASRRVNGGAECAVASLEVSHAGSGAFETPSHS-SHNAAP----------------PGA---------PAGGSLRGRDTSPSRYTSCLRSRRFPQLGGNGETPESAQP-----RVFEQDIDNLDEVDQAHGARRLSPRNSH-SSLGRGEHPQT-------------WLGAARAGTSTL-----------------EQYDYVRDGANGQRDG---------VKTRAM-PKDAHELKPAEGSISDTYTLPADA--------GTIDSPDAMHFRQSPPPIMSAA--------VAGGESNPRSEVMA-RPRQVLQGG-RSSARATPVPRSSVGGRNYTDNQVKQLGIIEASVVSSATAKDRAMYNLPRQGRTLTLTNVFKFVALRGAGAMYRLATDKQIEAHTGRHSNFFDGKIDARIVSTVRKDIGDEAITKSRKFSKVLLSLVAEGCNHPDCDWDHNSFTSMNIANLQARLEAETGTSALQFCSESVSSDGAPSSGPGVAPASAAAVI-----------------------AATLSPLGPSSLTGPGASSGSSNGAP----------SKRRLDLGRD--GGQTPSPGVKRLRRESRARST---------GVESTPTTGGXXXXXXXRSPPKEEDDMRAAEVLQGLKGV 717
            QMPP+L+ LFAHVMSRANEG     + AH W+EVL  A                   +G+ SPGP  PMSAQDWRKAEAFSV LQSLLA R + C SNG S ++   + G  +T                   + +    S ASS                 S PHANG+ KG        P+  GA+  P  AA TA P         H P  TPKE    G   EPSAP K VGRVA SRRVNGGAE AVASL VS AG GAFETP+HS SH+                   PG              SLRGR+ SPSRY + LRSRRFPQLGG               R  +   D L E  Q+ G RRLSPR+S  +S+GR EH +              W+  A A                      E   +  DG  G   G         ++TRA  PK ++EL PA  + S   + P           G + SP  M FR +PPPIMS          VA G  +PR+EV A RPRQVLQGG RS  RA P+PRSSVGGRNYTDN VKQLG+IEA+VV+SATA+DRA YNLPRQGRTLTLTNVFKF+ALRGAGAMYRLA DKQ+EAHTGRHSNFFDGKIDARIV  ++KDIGDEAITKSRKFSK+LLSLVAEGC HPDCDWDH SFTS  IANLQAR+EA TGTSAL+FC++           P V  A+                            +   SPL  S+  G                      SKRRLDLGRD  GGQTPSP +K+L+R +RAR T         GVESTPT  G       +SPPKEEDDMRAAEVLQGLK +
Sbjct:   13 QMPPNLMTLFAHVMSRANEGGSRGSAAAHGWDEVLNAAXXXXXXXXXXXXXXXXXXXSGTISPGPCCPMSAQDWRKAEAFSVHLQSLLAARDALCGSNGSSSSS---SRGAGATTGXXXXXXXXXXXXYYGPQSGAEGRCSPASSGPADGREPSPFPGGRKDSTPHANGRAKGGRAKAPAAPS--GAAATPNNAAGTAWPQ--------HVPGATPKESSSRGGGEEPSAPIKAVGRVAVSRRVNGGAEGAVASLAVSRAGPGAFETPAHSTSHHXXXXXXXXXXXXXXXXXXXPGTVDSXXXXXXXXXNSLRGREHSPSRYPARLRSRRFPQLGGXXXXXXXXXXXXXXXRAGDAGADGL-EGHQSQGGRRLSPRHSPPASVGR-EHGRGIPSDARRQHNAHGWVVTAGAEKRAAGXXXXXXXXXXXXRGEEEGGVFTHDGGRGHEGGXGRAGEGYGMRTRAAAPKGSYELGPAAVASSGPSSSPLPGACTPQITTGAVVSPVPMDFRPAPPPIMSXXXXXXXXXXVAAGRPSPRAEVAAPRPRQVLQGGGRSGGRAAPLPRSSVGGRNYTDNHVKQLGLIEAAVVASATARDRATYNLPRQGRTLTLTNVFKFIALRGAGAMYRLAMDKQVEAHTGRHSNFFDGKIDARIVGVIKKDIGDEAITKSRKFSKILLSLVAEGCTHPDCDWDHTSFTSEKIANLQARMEASTGTSALKFCAD-----------PAVFLAAXXXXXXXXXXXXXXXXXXXXXXXXXXSGSIPSSPLSGSAFAGXXXXXXXXXXXXXXXXXXXXXXSKRRLDLGRDDDGGQTPSPRLKKLKRAARARVTTAGSAAADGGVESTPTAEGNS-----KSPPKEEDDMRAAEVLQGLKDI 865          
BLAST of mRNA_H-elongata_contig14983.3336.1 vs. uniprot
Match: A0A835YUT3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT3_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.460e-46
Identity = 87/142 (61.27%), Postives = 108/142 (76.06%), Query Frame = 0
Query:  440 RSSVGGRNYTDNQVKQLGIIEASVVSSATAKDRAMYNLPRQGRTLTLTNVFKFVALRGAGAMYRLATDKQIEAHTGRHSNFFDGKIDARIVSTVRKDIGDEAITKSRKFSKVLLSLVAEGCNHPDCDWDHNSFTSMNIANLQ 581
            R+SVGGRNYTD Q++QL +IEA VV+ AT  D A +NLPRQ RTL LTN+FK++ALRGA  ++ +A  + +E  TGRHSNF+DGKID RIV+ V+ D+ D A T SRKFSKVLLSL+AEGC  P CDW + +F S NI  LQ
Sbjct:  369 RTSVGGRNYTDEQLRQLQLIEAEVVARATPGDHAAFNLPRQARTLALTNMFKYIALRGAARLHAMAVARGLEGRTGRHSNFYDGKIDTRIVAVVKHDMDDAAATASRKFSKVLLSLLAEGCGDPSCDWSYATFASDNINRLQ 510          
BLAST of mRNA_H-elongata_contig14983.3336.1 vs. uniprot
Match: A0A835YSU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSU2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.790e-22
Identity = 53/92 (57.61%), Postives = 71/92 (77.17%), Query Frame = 0
Query:  459 IEASVVSSATAKDRAMYNLPRQGRTLTLTNVFKFVALRGAGAMYRLATDKQIEAHTGRHSNFFDGKIDARIVSTVRKDIGDEAITKSRKFSK 550
            IEA V + AT  DRA ++LPRQ RTL LTN+FK++ALRGA  M+ LA  + +    G+HSNF+DGKIDAR+V+ VR+D+GD+  T++RKFSK
Sbjct:  313 IEARVAARATDADRAAFSLPRQARTLALTNMFKYIALRGAAQMHALAVLRGLHTCGGKHSNFYDGKIDARVVAIVRRDVGDDVATQTRKFSK 404          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14983.3336.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1A2_ECTSI8.050e-17846.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUT3_9STRA1.460e-4661.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YSU2_9STRA1.790e-2257.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..722
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..16

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14983contigH-elongata_contig14983:1302..3902 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14983.3336.1mRNA_H-elongata_contig14983.3336.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14983 216..3923 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14983.3336.1 ID=prot_H-elongata_contig14983.3336.1|Name=mRNA_H-elongata_contig14983.3336.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=723bp
MNDQMPPSLVALFAHVMSRANEGIRGSGSRAHSWEEVLQPATSAGSTSPG
PFPMSAQDWRKAEAFSVQLQSLLATRQSRCISNGHSRAAGHYANGVASTC
SSDAEAAMAHFDETVASYTNSYNHSVASSAVKSIPHANGKIKGKTKSTAM
HPNYAGASDAPPAAASTASPHPAAVFPRHHAPRVTPKEPCRAGEPSAPTK
VVGRVAASRRVNGGAECAVASLEVSHAGSGAFETPSHSSHNAAPPGAPAG
GSLRGRDTSPSRYTSCLRSRRFPQLGGNGETPESAQPRVFEQDIDNLDEV
DQAHGARRLSPRNSHSSLGRGEHPQTWLGAARAGTSTLEQYDYVRDGANG
QRDGVKTRAMPKDAHELKPAEGSISDTYTLPADAGTIDSPDAMHFRQSPP
PIMSAAVAGGESNPRSEVMARPRQVLQGGRSSARATPVPRSSVGGRNYTD
NQVKQLGIIEASVVSSATAKDRAMYNLPRQGRTLTLTNVFKFVALRGAGA
MYRLATDKQIEAHTGRHSNFFDGKIDARIVSTVRKDIGDEAITKSRKFSK
VLLSLVAEGCNHPDCDWDHNSFTSMNIANLQARLEAETGTSALQFCSESV
SSDGAPSSGPGVAPASAAAVIAATLSPLGPSSLTGPGASSGSSNGAPSKR
RLDLGRDGGQTPSPGVKRLRRESRARSTGVESTPTTGGSGGDGGSRSPPK
EEDDMRAAEVLQGLKGVGAPSV*
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