prot_H-elongata_contig1498.3331.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1498.3331.1
Unique Nameprot_H-elongata_contig1498.3331.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length377
Homology
BLAST of mRNA_H-elongata_contig1498.3331.1 vs. uniprot
Match: A0A6H5JU30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU30_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 5.000e-115
Identity = 209/382 (54.71%), Postives = 256/382 (67.02%), Query Frame = 0
Query:    1 MGHEFLIVTSFGIALAVTSVYLFLAHVKRISAPNKADPAGTLVRIDLTAALLEDQVARQRKSTAKRCRESLR-----TDAPAIEHPSVIKPTSIFCEITSSSTSLPSAKAVADHSFVWQERRKVGSDQNSPSRAQAISPSTSTCSTIMVPSPLWAEAFLKHAEAKRKELRDMVKRGEESAGWEAAWERLPPPRRRRVLVAVREELVHAVSHYIGQDENLFDAMCPELRTSALEEEHQAITGFSRLMRRCLDGKLLEPRSRVFATVQHALS-------EVASAGNFPKDKRGPVRAFLATFRKLCAYSFCIGVLEAVVSGRADGSAGPTMGSVCAALVKACGSGVLLWAFFNGLSQMSASNITGGDAAEGLAAGASVDGGSFL 370
            M +E LIV  FG+ALAV SV LF+AHVKRI+APN+ADPAGTLV +DL AAL +D+ A                    + A        ++P          S    +  A   H    +    VG+ Q + ++    + ++S  +T+++PSPLWAEA LKHAE KRK+LR MVK GE +AGWEA WERLP PRRR++L AVREELVHAVS YIG+DE LFD +CP L  SALEEEH+ I+G SRL+R C+DGKL EPRS+ F  V+ AL+         A+A N  KDKRGPVRAFL TFRKLC+ SFCIG LEA+VSGRADGSAGPT+GSVC+ALVK  GSGVLL+AFF+GL QMSAS +T  D+A GL AG    GGS +
Sbjct:    1 MTYEALIVVVFGVALAVASVALFIAHVKRINAPNRADPAGTLVHVDLGAALAKDEAAAXXXXXXXXXXXXXXXXXXDSSAGCSGDAFALQPNGAARRRRRPSVETANRCA---HGSQQETAAAVGTQQPTDTQQPREAGASSYTATMVLPSPLWAEAILKHAEVKRKKLRSMVKSGEIAAGWEAKWERLPRPRRRKLLEAVREELVHAVSSYIGRDEALFDVICPHLSLSALEEEHRGISGLSRLVRGCMDGKLPEPRSKAFVAVRDALAMAATGAAAAAAAENVSKDKRGPVRAFLPTFRKLCSSSFCIGALEAIVSGRADGSAGPTVGSVCSALVKTGGSGVLLFAFFHGLKQMSASEVT--DSA-GLPAGVGGGGGSRI 376          
BLAST of mRNA_H-elongata_contig1498.3331.1 vs. uniprot
Match: D8LCX7_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX7_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 1.830e-110
Identity = 197/361 (54.57%), Postives = 248/361 (68.70%), Query Frame = 0
Query:    1 MGHEFLIVTSFGIALAVTSVYLFLAHVKRISAPNKADPAGTLVRIDLTAALLEDQVARQRKS-----------TAKRCRESLRTDAPAIEHPSVIKPTSIFCEITSSSTSLPSAKAVADHSFVWQERRKVGSDQNSPSRAQAISPSTSTCSTIMVPSPLWAEAFLKHAEAKRKELRDMVKRGEESAGWEAAWERLPPPRRRRVLVAVREELVHAVSHYIGQDENLFDAMCPELRTSALEEEHQAITGFSRLMRRCLDGKLLEPRSRVFATVQHALSEVA-------SAGNFPKDKRGPVRAFLATFRKLCAYSFCIGVLEAVVSGRADGSAGPTMGSVCAALVKACGSGVLLWAFFNGLSQ 343
            M +E LIV  FG+ALAV SV LF+AHVKRI+APN+ADPAGTLV +DL AAL +D+                  T++        DA A++     +             S+ +A   A+ S   +    VG+ Q + ++    + ++S  +T+++PSPLWAEA LKHA+ KRK+LR MVK GE +AGWEA WERLP PR+R++L AV+EELVHAVS YIG+D+ LFDA+CP L  SALEEEH+ I+G SRL+R CLDGKL EPRS+ FA V+ AL++ A       +A N PKDKRGPVRAFL TFRKLC+ SFCIG LEA+VSGRADGSAGPT+GSVC+ALVK  GSGVLL+AFF GL Q
Sbjct:   33 MTYEALIVIGFGVALAVASVALFVAHVKRINAPNRADPAGTLVHVDLGAALAKDEAXXXXXXXXXXXXXXXXXTSEDNSAGCSRDAFALQPNGAAR--------RRKRPSVETANRCAEGSQ-QETAAAVGTQQPADTQQAREAGTSSYTATMVLPSPLWAEAILKHADVKRKKLRSMVKSGEIAAGWEAKWERLPRPRKRKLLEAVKEELVHAVSSYIGRDDALFDAICPHLSVSALEEEHRGISGLSRLVRGCLDGKLSEPRSKAFAAVRDALAKAAIGAAAAAAAENVPKDKRGPVRAFLPTFRKLCSSSFCIGALEAIVSGRADGSAGPTVGSVCSALVKTGGSGVLLFAFFLGLKQ 384          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1498.3331.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU30_9PHAE5.000e-11554.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCX7_ECTSI1.830e-11054.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 154..174
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 306..316
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 317..338
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 283..305
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..282
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 339..376
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1498contigH-elongata_contig1498:3349..6538 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1498.3331.1mRNA_H-elongata_contig1498.3331.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1498 3349..6903 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1498.3331.1 ID=prot_H-elongata_contig1498.3331.1|Name=mRNA_H-elongata_contig1498.3331.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=377bp
MGHEFLIVTSFGIALAVTSVYLFLAHVKRISAPNKADPAGTLVRIDLTAA
LLEDQVARQRKSTAKRCRESLRTDAPAIEHPSVIKPTSIFCEITSSSTSL
PSAKAVADHSFVWQERRKVGSDQNSPSRAQAISPSTSTCSTIMVPSPLWA
EAFLKHAEAKRKELRDMVKRGEESAGWEAAWERLPPPRRRRVLVAVREEL
VHAVSHYIGQDENLFDAMCPELRTSALEEEHQAITGFSRLMRRCLDGKLL
EPRSRVFATVQHALSEVASAGNFPKDKRGPVRAFLATFRKLCAYSFCIGV
LEAVVSGRADGSAGPTMGSVCAALVKACGSGVLLWAFFNGLSQMSASNIT
GGDAAEGLAAGASVDGGSFLIEGKDL*
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