prot_H-elongata_contig149778.3330.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig149778.3330.1
Unique Name	prot_H-elongata_contig149778.3330.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	120

Homology

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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: D7FWD1_ECTSI (Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 6.150e-65
Identity = 109/120 (90.83%), Postives = 117/120 (97.50%), Query Frame = 0

Query:    1 MFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNST 120
            MFTHYDRTHVAKLCENAGLYQRALEHYS PADIKRLM+YAPAMNSEFIVSYFGTLSRE SI+VM+EMLGKN+RQNLQMVVQI+T+YSDQIGA+SL+EMFE FKLYEGLFYYLGAIVNNST
Sbjct:  594 MFTHYDRTHVAKLCENAGLYQRALEHYSTPADIKRLMSYAPAMNSEFIVSYFGTLSRETSIDVMKEMLGKNMRQNLQMVVQIATAYSDQIGAESLMEMFESFKLYEGLFYYLGAIVNNST 713

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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A835YZH1_9STRA (Clathrin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA)

HSP 1 Score: 191 bits (486), Expect = 3.670e-54
Identity = 91/119 (76.47%), Postives = 106/119 (89.08%), Query Frame = 0

Query:    1 MFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 119
            MF+HYDR H+A+LCENAGLYQRALEHY  PADIKRLMA+APAMN+EFIV++FG LSRE SIEVM+EMLGKN+RQNL +VVQI+T YSDQIG ++L+ + EGFK YEGLFYYLG IVN S
Sbjct:  609 MFSHYDRNHIARLCENAGLYQRALEHYQAPADIKRLMAFAPAMNAEFIVNFFGNLSRETSIEVMKEMLGKNMRQNLPIVVQIATKYSDQIGCENLVALLEGFKSYEGLFYYLGGIVNFS 727

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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A1Y3NT83_PIRSE (Clathrin heavy chain n=5 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y3NT83_PIRSE)

HSP 1 Score: 155 bits (392), Expect = 1.690e-41
Identity = 72/119 (60.50%), Postives = 98/119 (82.35%), Query Frame = 0

Query:    1 MFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 119
            MFT YD+  +AKLCENAGLYQRALEHY+   DIKR + +   +NS++++++FG LS E S+E +RE+L  N+RQNLQ+VVQI+T YSDQ+G+ +LIEMFE FK +EGL+YYLG++VN+S
Sbjct:  604 MFTRYDKEKIAKLCENAGLYQRALEHYTDINDIKRNIVHVSNLNSDWVINFFGHLSPEQSLECLRELLNNNIRQNLQIVVQIATKYSDQLGSSNLIEMFESFKTFEGLYYYLGSVVNSS 722

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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: UPI00063FB558 (clathrin heavy chain 2-like n=1 Tax=Propithecus coquereli TaxID=379532 RepID=UPI00063FB558)

HSP 1 Score: 148 bits (373), Expect = 2.510e-41
Identity = 68/119 (57.14%), Postives = 95/119 (79.83%), Query Frame = 0

Query:    1 MFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 119
            MFTHYDR H+A+LCE AGL Q+ALEHY+   DIKR + +A  +N E++VS+FG+LS E S+E +R ML  N+RQNLQ+ +Q+++ Y +Q+G QSL+++FE F+ YEGLFY+LG+IVN S
Sbjct:   80 MFTHYDRAHIAQLCEKAGLLQQALEHYTDLYDIKRTLVHAHLLNPEWLVSFFGSLSVEDSVECLRAMLSANIRQNLQLCMQVASKYHEQLGTQSLVQLFESFRSYEGLFYFLGSIVNFS 198

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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A183J8Q7_9BILA (Uncharacterized protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183J8Q7_9BILA)

HSP 1 Score: 144 bits (362), Expect = 2.710e-41
Identity = 70/119 (58.82%), Postives = 93/119 (78.15%), Query Frame = 0

Query:    1 MFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 119
            MF HYDR HVA+LCENAGL QRALEHY+   DIKR + +   +  +++V+YFG+LS E S+E ++ ML  N+RQNLQ+VVQIST Y +Q+  Q+LI++FE FK +EGLFY+LG+IVN S
Sbjct:   51 MFHHYDRAHVAQLCENAGLLQRALEHYTDLYDIKRAVVHTHLLKPDWLVNYFGSLSVEDSLECLKAMLQANIRQNLQVVVQISTKYHEQLTTQALIDLFESFKSFEGLFYFLGSIVNFS 169

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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A7L2WNE3_PANHA (CLH1 protein (Fragment) n=1 Tax=Pandion haliaetus TaxID=56262 RepID=A0A7L2WNE3_PANHA)

HSP 1 Score: 150 bits (378), Expect = 5.380e-41
Identity = 70/119 (58.82%), Postives = 94/119 (78.99%), Query Frame = 0

Query:    1 MFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 119
            MFTHYDR H+A+LCE AGL QRALEHY+   DIKR + +   +N E++V++FG+LS E S+E +R ML  N+RQNLQ+ VQ+++ Y +Q+G QSL+E+FE FK YEGLFY+LG+IVN S
Sbjct:  250 MFTHYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSVEDSVECLRAMLSANIRQNLQLCVQVASKYHEQLGTQSLVELFESFKSYEGLFYFLGSIVNFS 368

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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A851CWW8_TODME (CLH1 protein (Fragment) n=1 Tax=Todus mexicanus TaxID=135184 RepID=A0A851CWW8_TODME)

HSP 1 Score: 149 bits (377), Expect = 6.250e-41
Identity = 71/119 (59.66%), Postives = 94/119 (78.99%), Query Frame = 0

Query:    1 MFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 119
            MFTHYDR HVA+LCE AGL QRALEHY+   DIKR + +   +N E++V++FG+LS E S+E +R ML  N+RQNLQ+ VQ+++ Y +Q+G QSL+E+FE FK YEGLFY+LG+IVN S
Sbjct:  282 MFTHYDRGHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSVEDSVECLRAMLSANIRQNLQLCVQVASKYHEQLGTQSLVELFESFKSYEGLFYFLGSIVNFS 400

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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A139ANL6_GONPJ (Clathrin heavy chain n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139ANL6_GONPJ)

HSP 1 Score: 153 bits (387), Expect = 7.990e-41
Identity = 72/120 (60.00%), Postives = 97/120 (80.83%), Query Frame = 0

Query:    1 MFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNST 120
            MFTHYDR H+A+LCE AGL+QRALEHY+   DIKR + +   +N E+IV++FG LS + S+E ++EML  N+RQNLQ+VVQI+T YS+Q+G + LI+MFE FK +EGL+YYLG++VN ST
Sbjct:  604 MFTHYDRAHIAQLCEKAGLFQRALEHYTDIYDIKRTIVHTQLLNPEWIVNFFGHLSVDQSMECLKEMLNSNMRQNLQIVVQIATKYSEQLGPKGLIQMFESFKSFEGLYYYLGSVVNFST 723

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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A316YX78_9BASI (Clathrin heavy chain n=2 Tax=Exobasidiales TaxID=5404 RepID=A0A316YX78_9BASI)

HSP 1 Score: 153 bits (386), Expect = 1.090e-40
Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = 0

Query:    1 MFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNST 120
            MFTHYDR  +A LCE AGL QRALEHY   ADIKR++ ++  +NSE++V+YFGTL+ E S++ M+EML  N+RQNL +VVQI+T YSD +G   LIEMFE FK +EGL+YYLG++VN ST
Sbjct:  605 MFTHYDRPRIANLCEKAGLLQRALEHYEDQADIKRVVVHSNLLNSEWLVNYFGTLTVEQSLDSMKEMLKVNIRQNLSVVVQIATKYSDLLGPVKLIEMFESFKSFEGLYYYLGSVVNLST 724

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BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Match: A0A2G9S2X2_LITCT (Clathrin-link domain-containing protein (Fragment) n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9S2X2_LITCT)

HSP 1 Score: 152 bits (384), Expect = 2.000e-40
Identity = 69/119 (57.98%), Postives = 95/119 (79.83%), Query Frame = 0

Query:    1 MFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVSYFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFEGFKLYEGLFYYLGAIVNNS 119
            MFTHYDR H+A+LCE AGL QRALEHY+ P D+KR + +   +N E++V++FG+LS E S+E +R ML  N+RQNLQ+ VQ+++ Y +Q+G Q+L+E+FE FK YEGLFY+LG+IVN S
Sbjct:  290 MFTHYDRAHIAQLCEKAGLLQRALEHYTDPYDVKRAVVHTHLLNPEWLVNFFGSLSVEDSVECLRAMLSANIRQNLQLCVQVASKYHEQLGTQTLVELFESFKSYEGLFYFLGSIVNFS 408

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot

BLAST of mRNA_H-elongata_contig149778.3330.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWD1_ECTSI	6.150e-65	90.83	Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879...	[more]
A0A835YZH1_9STRA	3.670e-54	76.47	Clathrin heavy chain n=1 Tax=Tribonema minus TaxID...	[more]
A0A1Y3NT83_PIRSE	1.690e-41	60.50	Clathrin heavy chain n=5 Tax=Neocallimastigaceae T...	[more]
UPI00063FB558	2.510e-41	57.14	clathrin heavy chain 2-like n=1 Tax=Propithecus co...	[more]
A0A183J8Q7_9BILA	2.710e-41	58.82	Uncharacterized protein n=1 Tax=Soboliphyme baturi...	[more]
A0A7L2WNE3_PANHA	5.380e-41	58.82	CLH1 protein (Fragment) n=1 Tax=Pandion haliaetus ...	[more]
A0A851CWW8_TODME	6.250e-41	59.66	CLH1 protein (Fragment) n=1 Tax=Todus mexicanus Ta...	[more]
A0A139ANL6_GONPJ	7.990e-41	60.00	Clathrin heavy chain n=1 Tax=Gonapodya prolifera (...	[more]
A0A316YX78_9BASI	1.090e-40	61.67	Clathrin heavy chain n=2 Tax=Exobasidiales TaxID=5...	[more]
A0A2G9S2X2_LITCT	2.000e-40	57.98	Clathrin-link domain-containing protein (Fragment)...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 1..120 e-value: 4.3E-6 score: 27.8
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PFAM	PF00637	Clathrin	coord: 1..57 e-value: 1.5E-7 score: 31.4
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PROSITE	PS50236	CHCR	coord: 83..120 score: 10.522
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PROSITE	PS50236	CHCR	coord: 1..80 score: 14.931
None	No IPR available	PANTHER	PTHR10292	CLATHRIN HEAVY CHAIN RELATED	coord: 1..119
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 2..117

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig149778	contig	H-elongata_contig149778:419..1540 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig149778.3330.1	mRNA_H-elongata_contig149778.3330.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig149778 419..1567 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig149778.3330.1 ID=prot_H-elongata_contig149778.3330.1|Name=mRNA_H-elongata_contig149778.3330.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MFTHYDRTHVAKLCENAGLYQRALEHYSMPADIKRLMAYAPAMNSEFIVS
YFGTLSREISIEVMREMLGKNVRQNLQMVVQISTSYSDQIGAQSLIEMFE
GFKLYEGLFYYLGAIVNNST

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR000547	Clathrin_H-chain/VPS_repeat
IPR016024	ARM-type_fold