prot_H-elongata_contig149315.3303.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig149315.3303.1
Unique Nameprot_H-elongata_contig149315.3303.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length45
Homology
BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: D7FK17_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK17_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.310e-11
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 0
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHVHE 40
            VKSWGTEGR E    IPP+D LH  V FRGEDIKDLHVHE
Sbjct:   39 VKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHE 78          
BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A6H5KDD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-11
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 0
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHVHE 40
            VKSWGTEGR E    IPP+D LH  V FRGEDIKDLHVHE
Sbjct:   39 VKSWGTEGRLEGDQQIPPSDHLHACVNFRGEDIKDLHVHE 78          
BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A835CZP5_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835CZP5_9MAGN)

HSP 1 Score: 55.8 bits (133), Expect = 7.450e-8
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 0
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHVHEVRPCK 45
            VKS+GTEGR E+G  +PP+D+++E + FRG DIKDL V    P +
Sbjct:   49 VKSFGTEGRKEDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPVQ 93          
BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A6J1IHM2_CUCMA (protein decapping 5-like n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1IHM2_CUCMA)

HSP 1 Score: 53.5 bits (127), Expect = 4.870e-7
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 0
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHVHEVRPCK 45
            V+S+GTEGR +EG  +PP+D++ E + FRG DIKDL V    P +
Sbjct:   50 VRSFGTEGRKQEGPQVPPSDKVFEFILFRGSDIKDLQVKSSPPVQ 94          
BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A8J5LFJ0_ZINOF (Uncharacterized protein n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LFJ0_ZINOF)

HSP 1 Score: 53.1 bits (126), Expect = 6.670e-7
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 0
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHV 38
            V+S+GTEGR ++G  IPP+D+++E + FRG DIKDL V
Sbjct:   49 VRSFGTEGRKQDGPQIPPSDKIYEYILFRGTDIKDLQV 86          
BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A836C876_9STRA (Scd6-like Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C876_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.290e-6
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHVHE 40
            VKSWGTE R E G  +P +D++   + FRG+DIKDLHVH+
Sbjct:   40 VKSWGTENRVE-GPQVPASDEIFGCIVFRGQDIKDLHVHD 78          
BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A1S3ZWV4_TOBAC (protein decapping 5-like isoform X4 n=3 Tax=Nicotiana TaxID=4085 RepID=A0A1S3ZWV4_TOBAC)

HSP 1 Score: 51.6 bits (122), Expect = 2.330e-6
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHV 38
            VKS+GTEGR ++G  I P+D+++E + FRG DIKDL V
Sbjct:  105 VKSYGTEGRKQDGPQISPSDKIYEYIFFRGSDIKDLQV 142          
BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A1S3ZX97_TOBAC (protein decapping 5-like isoform X1 n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S3ZX97_TOBAC)

HSP 1 Score: 51.6 bits (122), Expect = 2.340e-6
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHV 38
            VKS+GTEGR ++G  I P+D+++E + FRG DIKDL V
Sbjct:  105 VKSYGTEGRKQDGPQISPSDKIYEYIFFRGSDIKDLQV 142          
BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A388LKT5_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388LKT5_CHABU)

HSP 1 Score: 51.6 bits (122), Expect = 2.340e-6
Identity = 21/38 (55.26%), Postives = 31/38 (81.58%), Query Frame = 0
Query:    1 VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHV 38
            V+S+GTEGR ++G  IPP+D++++ + FRG DIKDL V
Sbjct:   49 VRSFGTEGRKQDGPEIPPSDKVYDYIIFRGSDIKDLQV 86          
BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Match: A0A1Z5JPN3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPN3_FISSO)

HSP 1 Score: 51.2 bits (121), Expect = 3.090e-6
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    1 VKSWGTEGR--SEEG-MHIPPADQLHEMVQFRGEDIKDLHVHE 40
            VK++GTEGR  +EEG + + PAD +H  + FRG+DIKDLHVHE
Sbjct:   39 VKTFGTEGRELAEEGCIFVAPADTVHPYLLFRGQDIKDLHVHE 81          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149315.3303.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FK17_ECTSI1.310e-1175.00Novel Sm-like protein with long N-and C-terminal d... [more]
A0A6H5KDD7_9PHAE1.600e-1175.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835CZP5_9MAGN7.450e-853.33Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
A0A6J1IHM2_CUCMA4.870e-751.11protein decapping 5-like n=3 Tax=Cucurbita TaxID=3... [more]
A0A8J5LFJ0_ZINOF6.670e-757.89Uncharacterized protein n=4 Tax=Zingiber officinal... [more]
A0A836C876_9STRA2.290e-657.50Scd6-like Sm domain-containing protein n=1 Tax=Tri... [more]
A0A1S3ZWV4_TOBAC2.330e-657.89protein decapping 5-like isoform X4 n=3 Tax=Nicoti... [more]
A0A1S3ZX97_TOBAC2.340e-657.89protein decapping 5-like isoform X1 n=5 Tax=Nicoti... [more]
A0A388LKT5_CHABU2.340e-655.26Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]
A0A1Z5JPN3_FISSO3.090e-660.47Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025609Lsm14-like, N-terminalPFAMPF12701LSM14coord: 1..40
e-value: 9.0E-11
score: 41.7
NoneNo IPR availableGENE3D2.30.30.100coord: 1..44
e-value: 1.5E-11
score: 45.9
NoneNo IPR availablePANTHERPTHR13586SCD6 PROTEIN-RELATEDcoord: 1..43
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149315contigH-elongata_contig149315:564..698 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149315.3303.1mRNA_H-elongata_contig149315.3303.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig149315 564..698 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig149315.3303.1 ID=prot_H-elongata_contig149315.3303.1|Name=mRNA_H-elongata_contig149315.3303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
VKSWGTEGRSEEGMHIPPADQLHEMVQFRGEDIKDLHVHEVRPCK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025609Lsm14-like_N
IPR010920LSM_dom_sf