prot_H-elongata_contig14897.3285.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig14897.3285.1
Unique Name	prot_H-elongata_contig14897.3285.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	162

Homology

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BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A0Y0JAL7_9PHAE (PsbV n=10 Tax=Fucales TaxID=3009 RepID=A0A0Y0JAL7_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 1.020e-102
Identity = 150/161 (93.17%), Postives = 156/161 (96.89%), Query Frame = 0

Query:    1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
            MFKKF ITF I S++NL + SVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMK+PTT+DGLESIAEIHPSIKSANIFTRMRSLDENDL+DIAGHILLQPKIVSEKWGGGKIYY
Sbjct:    1 MFKKFFITFTIVSLINLTNLSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKDPTTFDGLESIAEIHPSIKSANIFTRMRSLDENDLIDIAGHILLQPKIVSEKWGGGKIYY 161

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BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A0R6M468_UNDPI (Cytochrome c-550 n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M468_UNDPI)

HSP 1 Score: 288 bits (736), Expect = 7.690e-98
Identity = 145/161 (90.06%), Postives = 150/161 (93.17%), Query Frame = 0

Query:    1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
            MFKKF ++  IA +     SSVLAI+LDEATRTIPVT+DGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLD EALSLATPARNNIN LVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY
Sbjct:    1 MFKKFFLSLTIACLATSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDSEALSLATPARNNINGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161

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BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: D1J771_ECTSI (Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J771_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 8.980e-97
Identity = 142/161 (88.20%), Postives = 151/161 (93.79%), Query Frame = 0

Query:    1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
            MFKKF  + +I S++NL +SSVLAIELDEATRTIP T+DGKT VLTPEQVKRGKRLFNSSCGQCHVGG+TKTNPNLGLD EALSLATP+RNNI  LVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKI+SEKWGGGKIYY
Sbjct:    1 MFKKFFTSLIIVSLLNLGTSSVLAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKILSEKWGGGKIYY 161

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BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A8F0FAG4_9PHAE (Photosystem II protein V n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAG4_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 2.570e-96
Identity = 141/161 (87.58%), Postives = 151/161 (93.79%), Query Frame = 0

Query:    1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
            MFKKF I+  IA + N   SSVLAI+LDEATRTIPVT+DGKTTVLTPEQVKRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLATP+RNNIN LV+YMK+PTTYDGLESIAEIHPSIKSANIFTRMR+LDE DLVDIAGHILLQPKI+SEKWGGGKIYY
Sbjct:    1 MFKKFFISLTIACLANSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLATPSRNNINGLVNYMKDPTTYDGLESIAEIHPSIKSANIFTRMRALDEKDLVDIAGHILLQPKILSEKWGGGKIYY 161

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BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A1I9LVF9_9PHAE (Cytochrome c-550 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF9_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 6.060e-95
Identity = 140/161 (86.96%), Postives = 148/161 (91.93%), Query Frame = 0

Query:    1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
            M KK   + +IAS++NL S S  AIELDEATRTIPVT+DGKT VLTPEQVKRGKRLFNSSCGQCHVGG+TKTNPN+GLD EALSLATP+RNNI  LVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY
Sbjct:    1 MLKKVFTSLIIASLLNLISCSAFAIELDEATRTIPVTSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNVGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161

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BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A8F0F791_9PHAE (Photosystem II protein V n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F791_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 2.760e-91
Identity = 133/161 (82.61%), Postives = 146/161 (90.68%), Query Frame = 0

Query:    1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
            M +K  I F++    N+F+ SV AIELDEATRTIPV   GKTTVLTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLA+PARNNI+ LVDYMKNPTTYDGLESIAEIHPSIKSANIF+RMRSLD++DL DIAGHIL+QPKIVSEKWGGGKIYY
Sbjct:    1 MLRKIIIGFLVICFSNIFNPSVFAIELDEATRTIPVNGKGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLVDYMKNPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 161

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BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A6B7EXK3_9PHAE (Photosystem II cytochrome c550 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXK3_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 1.240e-90
Identity = 134/143 (93.71%), Postives = 137/143 (95.80%), Query Frame = 0

Query:   19 SSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
            SS  LAIELDEATRTIP T+DGKT VLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLD EALSLATP+RNNI+ LVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY
Sbjct:   22 SSKALAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDTEALSLATPSRNNISGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 164

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BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A8E6D6I5_9PHAE (Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6I5_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 6.410e-85
Identity = 131/163 (80.37%), Postives = 144/163 (88.34%), Query Frame = 0

Query:    1 MFKKFCITFVIASIVN--LFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
            M+K+  I  ++A +++  L  S+  AIELDEATRTI V + GKTT+LTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPAR+NI  LVDYMKNPTTYDGLESIAEIHPSIKSA+IF RMRSL E+DLV IAGHILLQPKIVSEKWGGGKIYY
Sbjct:    7 MWKRITIRLLMACLLSSSLLVSAAFAIELDEATRTISVDSTGKTTILTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARDNITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEDDLVAIAGHILLQPKIVSEKWGGGKIYY 169

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BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A2I4Q2C0_9PHAE (Cytochrome c-550 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C0_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 2.560e-83
Identity = 128/157 (81.53%), Postives = 137/157 (87.26%), Query Frame = 0

Query:    5 FCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
            FC+     S+ N F      IELDEATRTI V  +GKTTVLT EQ+KRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNI+ LVDYMK PTTYDGLESIAEIHPSIKSANIF+RMRSLD++DL DIAGHIL+QPKIVSEKWGGGKIYY
Sbjct:   13 FCLFSSFISVPNTFG-----IELDEATRTIKVNKEGKTTVLTAEQLKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNIDGLVDYMKAPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 164

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BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A7S6ZPA0_9STRA (Cytochrome c-550 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA0_9STRA)

HSP 1 Score: 246 bits (627), Expect = 3.370e-81
Identity = 122/163 (74.85%), Postives = 139/163 (85.28%), Query Frame = 0

Query:    1 MFKKFCITFVIASIV--NLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
            MFKKF   F+ + ++  N+      A+ELDEATRTIP+ N GKTT+L+ EQVKRGKRLFN SCGQCHVGG+TKTNPNLGLD EALSLATP+RN+I  LVDYMKNPTTYDGLESIAEIHPSIKSA+IF RMRSL E DLV IAGHILLQPK+++EKWGGGKIY+
Sbjct:    1 MFKKFFSLFLASFLLFSNILGPVAFAVELDEATRTIPLDNTGKTTILSAEQVKRGKRLFNVSCGQCHVGGITKTNPNLGLDTEALSLATPSRNSITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVSIAGHILLQPKVIAEKWGGGKIYF 163

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot

BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0Y0JAL7_9PHAE	1.020e-102	93.17	PsbV n=10 Tax=Fucales TaxID=3009 RepID=A0A0Y0JAL7_...	[more]
A0A0R6M468_UNDPI	7.690e-98	90.06	Cytochrome c-550 n=36 Tax=Phaeophyceae TaxID=2870 ...	[more]
D1J771_ECTSI	8.980e-97	88.20	Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 R...	[more]
A0A8F0FAG4_9PHAE	2.570e-96	87.58	Photosystem II protein V n=2 Tax=Ecklonia TaxID=10...	[more]
A0A1I9LVF9_9PHAE	6.060e-95	86.96	Cytochrome c-550 n=1 Tax=Pleurocladia lacustris Ta...	[more]
A0A8F0F791_9PHAE	2.760e-91	82.61	Photosystem II protein V n=1 Tax=Protohalopteris s...	[more]
A0A6B7EXK3_9PHAE	1.240e-90	93.71	Photosystem II cytochrome c550 n=1 Tax=Cladosiphon...	[more]
A0A8E6D6I5_9PHAE	6.410e-85	80.37	Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233...	[more]
A0A2I4Q2C0_9PHAE	2.560e-83	81.53	Cytochrome c-550 n=1 Tax=Dictyopteris divaricata T...	[more]
A0A7S6ZPA0_9STRA	3.370e-81	74.85	Cytochrome c-550 n=1 Tax=Schizocladia ischiensis T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016003	Photosystem II cytochrome c-550 precursor	PIRSF	PIRSF005890	Phot_II_cyt_c550	coord: 1..161 e-value: 1.2E-70 score: 234.3
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 27..155 e-value: 2.0E-55 score: 188.0
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 6..154
IPR029490	Cytochrome c-550 domain	PFAM	PF14495	Cytochrom_C550	coord: 26..161 e-value: 6.2E-59 score: 197.6
IPR017851	Photosystem II PsbV, cytochrome c-550 precursor	TIGRFAM	TIGR03045	TIGR03045	coord: 7..158 e-value: 3.1E-73 score: 242.7
IPR017851	Photosystem II PsbV, cytochrome c-550 precursor	HAMAP	MF_01378	PSII_Cyt550	coord: 2..161 score: 40.703
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 25..161
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..15
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..24 score: 0.837
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 48..147 score: 10.639

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig14897	contig	H-elongata_contig14897:6717..7202 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig14897.3285.1	mRNA_H-elongata_contig14897.3285.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig14897 6717..7202 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig14897.3285.1 ID=prot_H-elongata_contig14897.3285.1|Name=mRNA_H-elongata_contig14897.3285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQV
KRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYM
KNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIV
SEKWGGGKIYY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016003	PSII_cyt_c550
IPR036909	Cyt_c-like_dom_sf
IPR029490	Cytochrom_C550
IPR017851	PSII_PsbV_cyt_c550
IPR009056	Cyt_c-like_dom