prot_H-elongata_contig14897.3283.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14897.3283.1
Unique Nameprot_H-elongata_contig14897.3283.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length89
Homology
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A2R4QPT1_9PHAE (50S ribosomal protein L27 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPT1_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.970e-44
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 0
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISIFN 82
            MAHKKGAGSTKNGRDSK KRLGVKCFHGHQVK GNILIRQRGLTFKPGDNVGIGKDYTLYA + G V+FKKSN  TSISI N
Sbjct:    1 MAHKKGAGSTKNGRDSKPKRLGVKCFHGHQVKAGNILIRQRGLTFKPGDNVGIGKDYTLYALKEGMVYFKKSNTTTSISISN 82          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A141BSB3_9PHAE (50S ribosomal protein L27, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB3_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 4.480e-41
Identity = 66/81 (81.48%), Postives = 72/81 (88.89%), Query Frame = 0
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISIF 81
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQV+ GNILIRQRGL FKPG NVGIG+DYTLYA + G V FKK+  +TSIS+F
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVRAGNILIRQRGLKFKPGQNVGIGRDYTLYALKEGLVFFKKTTKDTSISVF 81          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A0R6MBY3_UNDPI (50S ribosomal protein L27, chloroplastic n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6MBY3_UNDPI)

HSP 1 Score: 132 bits (333), Expect = 9.210e-39
Identity = 65/80 (81.25%), Postives = 68/80 (85.00%), Query Frame = 0
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISI 80
            MAHKKGAGSTKNGRDSKSKRLGVKCF GH V+ GNILIRQRGL+FKPGDNVGIGKDYTLYA  AG V FKK    T IS+
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVEAGNILIRQRGLSFKPGDNVGIGKDYTLYALTAGLVSFKKKKKQTCISV 80          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: D1J768_ECTSI (50S ribosomal protein L27, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J768_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 3.730e-38
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 0
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISIFNHNQ 85
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGH+V+ GNILIRQRG++F+PG NVG+G+DYTLYA   G V FKK N  T ISI   N+
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGISFEPGKNVGVGRDYTLYASVEGVVSFKKKNKKTFISIIELNE 85          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A8F0F6S3_AKKLU (Ribosomal protein L27 n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0F6S3_AKKLU)

HSP 1 Score: 130 bits (328), Expect = 5.030e-38
Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 0
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISI 80
            MAHKKGAGSTKNGRDSKSKRLGVKCF GH+V+ GNILIRQRGL++KPG+NVGIG+DYTLYA + G V FKK N  T IS+
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHKVQAGNILIRQRGLSYKPGENVGIGRDYTLYALKEGLVSFKKKNKKTCISV 80          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A8F0F9K0_9PHAE (Ribosomal protein L27 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F9K0_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.110e-37
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 0
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISI 80
            MAHKKGAGSTKNGRDSKSKRLGVKCF GH V+ GNILIRQRGL+FKPG NVG+G+DYTLYA + G V FKK N  T IS+
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVQAGNILIRQRGLSFKPGSNVGVGRDYTLYALKEGLVSFKKVNKKTCISV 80          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A7T8JKF2_SCYLO (50S ribosomal protein L27, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JKF2_SCYLO)

HSP 1 Score: 127 bits (320), Expect = 1.860e-36
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 0
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISI 80
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGH+V+ GNILIRQRG++F+PG NVG+G+DYTLYA   G V FKK    T ISI
Sbjct:    3 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGVSFEPGKNVGVGRDYTLYACVEGVVSFKKKKKKTCISI 82          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A1I9LVY3_9PHAE (50S ribosomal protein L27, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVY3_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 7.550e-36
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 0
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISIF 81
            MAHKKGAGSTKNGRDS+SKRLGVKCFHGH+V+ GNILIRQRG++F+PG NVG+G+DYTLYA   G V FKK+   T ISI 
Sbjct:    1 MAHKKGAGSTKNGRDSRSKRLGVKCFHGHKVQAGNILIRQRGVSFEPGKNVGMGRDYTLYASIEGIVSFKKTKKKTYISII 81          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: A0A8F0F794_9PHAE (Ribosomal protein L27 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F794_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.970e-35
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 0
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKK 71
            MAHKKGAGSTKNGRDSKSKRLGVKCF GHQV+ GNILIRQRGL+FKPG+NVG GKDYTLYA + G+V F+K
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHQVQAGNILIRQRGLSFKPGENVGTGKDYTLYALKEGSVFFQK 71          
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Match: B2XTB2_HETAK (50S ribosomal protein L2 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTB2_HETAK)

HSP 1 Score: 123 bits (308), Expect = 7.120e-35
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 0
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDNVGIGKDYTLYAREAGTVHFKKSNNNTSISIFNHN 84
            MAHKKGAGSTKNGRDS SKRLGVKCF  H+V  G+I+IRQRGL  K G+N+GIGKD+TLYA EAG V FKKS N T +SI N N
Sbjct:    1 MAHKKGAGSTKNGRDSNSKRLGVKCFQNHKVSKGSIIIRQRGLRVKAGENIGIGKDFTLYALEAGLVKFKKSRNKTIVSIENCN 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14897.3283.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QPT1_9PHAE1.970e-4487.8050S ribosomal protein L27 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSB3_9PHAE4.480e-4181.4850S ribosomal protein L27, chloroplastic n=14 Tax=... [more]
A0A0R6MBY3_UNDPI9.210e-3981.2550S ribosomal protein L27, chloroplastic n=23 Tax=... [more]
D1J768_ECTSI3.730e-3874.1250S ribosomal protein L27, chloroplastic n=2 Tax=E... [more]
A0A8F0F6S3_AKKLU5.030e-3877.50Ribosomal protein L27 n=2 Tax=Phaeophyceae TaxID=2... [more]
A0A8F0F9K0_9PHAE2.110e-3777.50Ribosomal protein L27 n=2 Tax=Laminariales TaxID=2... [more]
A0A7T8JKF2_SCYLO1.860e-3676.2550S ribosomal protein L27, chloroplastic n=4 Tax=S... [more]
A0A1I9LVY3_9PHAE7.550e-3674.0750S ribosomal protein L27, chloroplastic n=1 Tax=P... [more]
A0A8F0F794_9PHAE1.970e-3583.10Ribosomal protein L27 n=1 Tax=Protohalopteris sp. ... [more]
B2XTB2_HETAK7.120e-3572.6250S ribosomal protein L2 n=2 Tax=Heterosigma akash... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001684Ribosomal protein L27PRINTSPR00063RIBOSOMALL27coord: 29..53
score: 52.77
coord: 54..78
score: 35.85
coord: 4..28
score: 66.92
IPR001684Ribosomal protein L27PFAMPF01016Ribosomal_L27coord: 2..80
e-value: 1.7E-34
score: 117.7
IPR001684Ribosomal protein L27TIGRFAMTIGR00062TIGR00062coord: 1..79
e-value: 1.7E-32
score: 109.3
IPR001684Ribosomal protein L27PANTHERPTHR15893RIBOSOMAL PROTEIN L27coord: 1..83
IPR001684Ribosomal protein L27HAMAPMF_00539Ribosomal_L27coord: 1..83
score: 24.246
NoneNo IPR availableGENE3D2.40.50.1030coord: 6..88
e-value: 1.1E-26
score: 95.0
NoneNo IPR availablePRODOMPD003114coord: 29..69
e-value: 2.0E-10
score: 151.0
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 2..79
IPR018261Ribosomal protein L27, conserved sitePROSITEPS00831RIBOSOMAL_L27coord: 34..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14897contigH-elongata_contig14897:5572..5838 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14897.3283.1mRNA_H-elongata_contig14897.3283.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14897 5572..5838 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14897.3283.1 ID=prot_H-elongata_contig14897.3283.1|Name=mRNA_H-elongata_contig14897.3283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVKVGNILIRQRGLTFKPGDN
VGIGKDYTLYAREAGTVHFKKSNNNTSISIFNHNQKVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001684Ribosomal_L27
IPR018261Ribosomal_L27_CS