prot_H-elongata_contig14882.3272.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig14882.3272.1
Unique Name	prot_H-elongata_contig14882.3272.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	122

Homology

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BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: D8LLC4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC4_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 2.020e-51
Identity = 96/104 (92.31%), Postives = 102/104 (98.08%), Query Frame = 0

Query:    3 TNRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRNQ 106
            +NRNVQAKNRAPA+IQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKE+EDAIRKQREHIGNWLKY+ WEESQ EFER+RSVYER+LEVDYRNQ
Sbjct:    2 SNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQ 105

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BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A7S2UZX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZX6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.960e-38
Identity = 70/105 (66.67%), Postives = 91/105 (86.67%), Query Frame = 0

Query:    2 STNRNVQAKNRAPAAIQITAEQILREAKDRQ-LDVE-VKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYR 104
            +T +++  KNRAPA IQITAEQILREAK+R  +D E +KAPRQ ITD EEL+ +RMRKRKE+ED+IR+QR+H+G W+KYA WEESQ+E+ER+RS+YER L+V+YR
Sbjct:   16 NTAKSIPVKNRAPAPIQITAEQILREAKERSFVDSETIKAPRQNITDLEELQTYRMRKRKEFEDSIRRQRQHLGTWMKYATWEESQKEYERARSIYERALDVEYR 120

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BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A835ZA95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA95_9STRA)

HSP 1 Score: 136 bits (342), Expect = 7.160e-35
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 0

Query:    4 NRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERS 91
            +RN+Q KNRAPA IQI+AEQILREA+DRQ+DVEVKAPRQQITD EEL VFRMRKRKEYED+IR QR+HIG W+KYAAWEESQ EF R+
Sbjct:    2 SRNIQVKNRAPAPIQISAEQILREARDRQIDVEVKAPRQQITDAEELTVFRMRKRKEYEDSIRMQRQHIGTWIKYAAWEESQAEFARA 89

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BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: W7TBF3_9STRA (Pre-mrna-splicing factor clf1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBF3_9STRA)

HSP 1 Score: 126 bits (316), Expect = 8.800e-35
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 0

Query:    4 NRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 105
            +R V  KNRAPAAIQITAEQILREA DR +  E KAPR  ITD EELR +R+ KRKE+ED IR+QR  +G ++KYAAWEESQ EFER+RSVYER L+VDYRN
Sbjct:    2 SRKVLVKNRAPAAIQITAEQILREANDRVVQ-EDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRN 102

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BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A7S3XNW0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNW0_HETAK)

HSP 1 Score: 133 bits (335), Expect = 4.990e-34
Identity = 69/105 (65.71%), Postives = 90/105 (85.71%), Query Frame = 0

Query:    2 STNRNVQAKNRAPAAIQITAEQILREAKDRQLDVE-VKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 105
            S N+ +Q KNRAPA IQITAEQILRE+K+R +D + +KAPRQ ITD EEL  +RMRKRKE+ED+IR+QR+H+G W KYA WEESQ+E+ER+RS+YER L+VD+++
Sbjct:    4 SINKAIQPKNRAPAPIQITAEQILRESKERSVDGQNIKAPRQNITDLEELTQYRMRKRKEFEDSIRRQRQHLGTWHKYAKWEESQKEYERARSIYERALDVDFKS 108

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BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: L8GIJ4_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIJ4_ACACA)

HSP 1 Score: 118 bits (295), Expect = 5.130e-32
Identity = 65/108 (60.19%), Postives = 88/108 (81.48%), Query Frame = 0

Query:    5 RNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRNQVRFLRF 112
            R  Q KN++ A IQITAEQI+REA++RQ + E++ P+Q+ITD+EEL  +R+RKRKE+ED IR+QR  I NWLKYAAWE+SQ E ER+R+VYER L+V+YRN   +L++
Sbjct:    8 RAPQVKNKSAAEIQITAEQIIREAQERQ-EEEIQPPKQKITDKEELDEYRLRKRKEFEDQIRRQRGLITNWLKYAAWEDSQGEMERARNVYERALDVEYRNVTIWLKW 114

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BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A1V9ZES9_9STRA (Pre-mRNA-splicing factor, Crooked neck n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZES9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.850e-31
Identity = 68/105 (64.76%), Postives = 85/105 (80.95%), Query Frame = 0

Query:    1 MSTNRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 105
            MS+ +    KNRAPA IQITAEQILREA+DR+ +  VK  R++ITD EEL  +RM KRK +ED IR+QREH+GNW+KYA WEE+Q EFER+RS+YER L+VDY+N
Sbjct:    1 MSSGKKSAVKNRAPAPIQITAEQILREAQDRK-EAAVKPSRRRITDIEELDEYRMSKRKTFEDQIRRQREHMGNWIKYAQWEEAQHEFERARSIYERALDVDYKN 104

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BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A4D9CYM6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYM6_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.630e-31
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 0

Query:    4 NRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 105
            +R V  KNRAPAAIQITAEQILREA DR +  E KAPR  ITD EELR +R+ KRKE+ED IR+QR  +G ++KYAAWEESQ EFER+RSVYER L+VDYRN
Sbjct:    2 SRKVLVKNRAPAAIQITAEQILREANDRVVQ-EDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRN 102

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BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: U6KMV9_EIMTE (Crooked neck-like protein 1, putative n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6KMV9_EIMTE)

HSP 1 Score: 116 bits (291), Expect = 7.210e-31
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = 0

Query:    5 RNVQAKNRAPAAIQITAEQILREAKDRQL-DVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRNQVRFLRFL 113
            + ++ KN+ PAA+QITAEQ+LREA DRQL D     P+Q+I DEEEL V+R+ KRKE+ED+IR+QR HIG W+KYA WE +QRE   +RSV+ER L VDY+N   +L+++
Sbjct:   22 KQMEVKNKMPAAVQITAEQLLREAVDRQLEDAAAAKPQQRIVDEEELEVYRLNKRKEFEDSIRRQRHHIGTWIKYALWEAAQRE---ARSVFERALLVDYQNVSLWLKYI 128

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BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A2G8LIW3_STIJA (Putative crooked neck-like protein 1-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LIW3_STIJA)

HSP 1 Score: 118 bits (295), Expect = 7.520e-31
Identity = 59/96 (61.46%), Postives = 80/96 (83.33%), Query Frame = 0

Query:   10 KNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 105
            KN+ PA +QITAEQILREAK+R+L+     P+Q+ITD EEL+ +++RKRKE+ED +RK R  +GNW+KYAAWE+SQ E +R+RS+YER L+VD+RN
Sbjct:   20 KNKMPAEMQITAEQILREAKERELEAVPAPPKQKITDPEELQEYKLRKRKEFEDNLRKNRSVMGNWIKYAAWEDSQNEIDRARSIYERALDVDHRN 115

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot

BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LLC4_ECTSI	2.020e-51	92.31	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S2UZX6_9STRA	4.960e-38	66.67	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A835ZA95_9STRA	7.160e-35	80.68	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
W7TBF3_9STRA	8.800e-35	70.59	Pre-mrna-splicing factor clf1 n=1 Tax=Nannochlorop...	[more]
A0A7S3XNW0_HETAK	4.990e-34	65.71	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
L8GIJ4_ACACA	5.130e-32	60.19	Uncharacterized protein n=1 Tax=Acanthamoeba caste...	[more]
A0A1V9ZES9_9STRA	1.850e-31	64.76	Pre-mRNA-splicing factor, Crooked neck n=1 Tax=Thr...	[more]
A0A4D9CYM6_9STRA	2.630e-31	70.59	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]
U6KMV9_EIMTE	7.210e-31	57.27	Crooked neck-like protein 1, putative n=1 Tax=Eime...	[more]
A0A2G8LIW3_STIJA	7.520e-31	61.46	Putative crooked neck-like protein 1-like n=1 Tax=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 15..116 e-value: 2.8E-7 score: 32.0
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 62..105
None	No IPR available	PANTHER	PTHR11246	PRE-MRNA SPLICING FACTOR	coord: 3..112
None	No IPR available	PANTHER	PTHR11246:SF18		coord: 3..112

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig14882	contig	H-elongata_contig14882:6575..7318 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig14882.3272.1	mRNA_H-elongata_contig14882.3272.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig14882 6575..7318 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig14882.3272.1 ID=prot_H-elongata_contig14882.3272.1|Name=mRNA_H-elongata_contig14882.3272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MSTNRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEEL
RVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLE
VDYRNQVRFLRFLYSLPLCYC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf