prot_H-elongata_contig147980.3236.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig147980.3236.1
Unique Nameprot_H-elongata_contig147980.3236.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length57
Homology
BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: D7FMQ4_ECTSI (Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ4_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.860e-28
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0
Query:    4 PAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 56
            PAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM
Sbjct:   11 PAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 63          
BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A6V1RZC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RZC8_HETAK)

HSP 1 Score: 109 bits (273), Expect = 2.470e-28
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0
Query:    3 TPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 56
            TP VPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM
Sbjct:   34 TPGVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 87          
BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A7S2UZT5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZT5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.530e-27
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 0
Query:    3 TPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 56
            +P VPQI PLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM
Sbjct:   15 SPGVPQITPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 68          
BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A836CM24_9STRA (Rab6, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM24_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.240e-26
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0
Query:    6 VPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 56
            +PQ+APLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM
Sbjct:   16 IPQVAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 66          
BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A7S1TP34_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP34_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.980e-25
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0
Query:    7 PQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 56
            P IAPLAKYKLVFLGDQ+VGKTSIITRFMYDNFDKNYQATIGIDFLSKTM
Sbjct:   14 PSIAPLAKYKLVFLGDQNVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 63          
BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A7S1XJY6_9STRA (Hypothetical protein n=6 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJY6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.880e-25
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0
Query:    7 PQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 56
            P IAPLAKYKLVFLGDQ+VGKTSIITRFMYDNFDKNYQATIGIDFLSKTM
Sbjct:   14 PSIAPLAKYKLVFLGDQNVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 63          
BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A7S0FKM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FKM4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.330e-24
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 0
Query:    9 IAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 56
            +APLAKYKLVFLGDQSVGKTSIITRFMYDNFD++YQATIGIDFLSKTM
Sbjct:    3 LAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDRHYQATIGIDFLSKTM 50          
BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A7S2HHR8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHR8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.790e-24
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0
Query:    6 VPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 56
            VP+IAPLAKYKLVFLGDQSVGKTSIITRFMYD F+K+YQATIGIDFLSKTM
Sbjct:   19 VPKIAPLAKYKLVFLGDQSVGKTSIITRFMYDQFEKSYQATIGIDFLSKTM 69          
BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: K3WVM7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVM7_GLOUD)

HSP 1 Score: 97.1 bits (240), Expect = 1.730e-23
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 0
Query:    2 STPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 56
            +T +VPQIAPLAKYKLVFLGDQ VGKTS+ITRFMYD FD  YQATIGIDFLSKTM
Sbjct:   27 NTVSVPQIAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTM 81          
BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A4D9D1C8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1C8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.900e-23
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0
Query:    1 TSTPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 56
            TS  ++PQI  LAKYKLVFLGDQ VGKTSIITRFMYD F+KNYQATIGIDFLSKTM
Sbjct:   11 TSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTM 66          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMQ4_ECTSI1.860e-28100.00Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1RZC8_HETAK2.470e-2898.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UZT5_9STRA2.530e-2794.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CM24_9STRA1.240e-2696.08Rab6, rab family GTPase n=1 Tax=Tribonema minus Ta... [more]
A0A7S1TP34_9STRA1.980e-2596.00Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1XJY6_9STRA6.880e-2596.00Hypothetical protein n=6 Tax=Phaeomonas parva TaxI... [more]
A0A7S0FKM4_9STRA2.330e-2493.75Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S2HHR8_9STRA4.790e-2492.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K3WVM7_GLOUD1.730e-2385.45Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A4D9D1C8_9STRA1.900e-2383.93Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 15..36
score: 41.61
coord: 38..54
score: 33.13
NoneNo IPR availableGENE3D3.40.50.300coord: 8..56
e-value: 2.2E-14
score: 54.9
NoneNo IPR availablePFAMPF08477Roccoord: 16..56
e-value: 2.4E-13
score: 50.3
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 9..56
NoneNo IPR availablePANTHERPTHR24073:SF1054coord: 9..56
NoneNo IPR availablePROSITEPS51419RABcoord: 9..56
score: 10.089
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 14..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147980contigH-elongata_contig147980:586..756 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147980.3236.1mRNA_H-elongata_contig147980.3236.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig147980 586..756 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig147980.3236.1 ID=prot_H-elongata_contig147980.3236.1|Name=mRNA_H-elongata_contig147980.3236.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
TSTPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGID
FLSKTM*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase