prot_H-elongata_contig14785.3229.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14785.3229.1
Unique Nameprot_H-elongata_contig14785.3229.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length564
Homology
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BLAST of mRNA_H-elongata_contig14785.3229.1 vs. uniprot
Match: D7G286_ECTSI (Centrin-1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G286_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 3.800e-74
Identity = 235/604 (38.91%), Postives = 291/604 (48.18%), Query Frame = 0 
Query:    9 RGFSTAPALISAPDLSAVDLSQTQIFPVSKKSPRRKKRHWRDDWKELVITASPYRRVAERARTARRFRAERGASTAADARAELEERVSASLVGVVPEEYCRDAPKQHPIDHGYDRRETQVELERGSDRKMLGAVQAPLNSSRFDYTHLHSAENYS--------PIFFLVVRPFST-----------PACTFS---LSDGGNHEWWRGKLCSSP----SQTRHPRSSKRQAWPNIAPNTSGTSVGRDVGRRAQTTN-EKSRRRLAAFLSNMESDAVKGGADIEHRCATFCGGTPMIDVKRTENVSPI-----AISGGSSAERAFGLGGNENALAIPSRSMTADLVGLLEQCLGRGIWVDRVASPLARPLDAILAYLPFEGAGLYDESGRRFLPSKGRGDNNSDGTKSNKNSMLDYHQRESTNDQERRTTKITPVTAADTSSSSDGVVVAATGQPR----QGEG--TSTNIVDSFSLTRTMKKGELVAKVPRAVWLVRVAAVMEMRRDRDEAVRLFGKASAALTG--------GVRDSRQDC---CPKGGGVPTDRIECSIGCGDQYAATTDVCMNRDSRDLFPYSVRAHHLASMIERAYGRHFRR 563
            R  STAPA I  P LS VDL+QTQ FPV KK+ R +KR W +DW+ELVI ASPY + A +AR  RR RAERGASTAADARAE+EE+VS SL+GVVPEE+CRDAP                 +E  S    L AV     +        +SAE+ +        PI   V    +T           PA T     +  G  H+       S P     Q +H    KRQ          G           +  N E+SRRRLAAFL +                             R E   P      A++ G   +  FGLGG+      PS SMTA+ VGLLE  LG G+W D VAS LARPL+A+LAYLP EGA L+DESGRRF P  G  +  ++    N+ S        S + ++++T      T +       G+  A TG  R    QG    ++     S  LT TM++G    + PRAVWL +VAAVME R DRDEAVRL+G+A+A LTG        G RD        CP   G         +G GD+              DLFPYS RAH+LAS+IER Y RHF R
Sbjct:   37 RDLSTAPAWIGFPGLSGVDLTQTQTFPVDKKA-RPRKRRWGEDWRELVIGASPYNKAAAKARAGRRARAERGASTAADARAEIEEKVSTSLLGVVPEEFCRDAPPA---------------VEPSSSSSSLKAVTVAAGARA-----TNSAEDAADGAGSGRRPIKIAVESSATTGSRDVSSSLAAPAATGGGDCVVAGAAHQRGLPTKASGPPYSDQQQQHASRPKRQR---------GXXXXXXXXXXXERRNGERSRRRLAAFLEDQXXXXXXXXXXXXXXXXXX----------RAEEGQPCDGSNSAVTAGRKDQTFFGLGGDALEPTPPSESMTANFVGLLEGSLGLGVWTDPVASQLARPLNAVLAYLPPEGARLFDESGRRFTPPGGSHEAEANLPPDNEPSAAHAT---SPDGRKKKTAXXXXXTTS-------GIKAAPTGAGRGPTTQGAACISAPGTAASSLLTVTMERGT-AEEAPRAVWLGQVAAVMEARGDRDEAVRLYGEAAAELTGKREGASRIGSRDGSGGTASPCPPAAGKGRSA---QLGGGDRGVGAGA------GPDLFPYSARAHYLASIIERTYRRHFLR 580
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14785.3229.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G286_ECTSI3.800e-7438.91Centrin-1, putative n=1 Tax=Ectocarpus siliculosus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14785contigH-elongata_contig14785:2729..7581 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14785.3229.1mRNA_H-elongata_contig14785.3229.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14785 2729..7581 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14785.3229.1 ID=prot_H-elongata_contig14785.3229.1|Name=mRNA_H-elongata_contig14785.3229.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=564bp
DDSAKLFSRGFSTAPALISAPDLSAVDLSQTQIFPVSKKSPRRKKRHWRD
DWKELVITASPYRRVAERARTARRFRAERGASTAADARAELEERVSASLV
GVVPEEYCRDAPKQHPIDHGYDRRETQVELERGSDRKMLGAVQAPLNSSR
FDYTHLHSAENYSPIFFLVVRPFSTPACTFSLSDGGNHEWWRGKLCSSPS
QTRHPRSSKRQAWPNIAPNTSGTSVGRDVGRRAQTTNEKSRRRLAAFLSN
MESDAVKGGADIEHRCATFCGGTPMIDVKRTENVSPIAISGGSSAERAFG
LGGNENALAIPSRSMTADLVGLLEQCLGRGIWVDRVASPLARPLDAILAY
LPFEGAGLYDESGRRFLPSKGRGDNNSDGTKSNKNSMLDYHQRESTNDQE
RRTTKITPVTAADTSSSSDGVVVAATGQPRQGEGTSTNIVDSFSLTRTMK
KGELVAKVPRAVWLVRVAAVMEMRRDRDEAVRLFGKASAALTGGVRDSRQ
DCCPKGGGVPTDRIECSIGCGDQYAATTDVCMNRDSRDLFPYSVRAHHLA
SMIERAYGRHFRR*
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