prot_H-elongata_contig14752.3219.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14752.3219.1
Unique Nameprot_H-elongata_contig14752.3219.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length444
Homology
BLAST of mRNA_H-elongata_contig14752.3219.1 vs. uniprot
Match: D7G2W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W5_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 6.860e-75
Identity = 179/374 (47.86%), Postives = 224/374 (59.89%), Query Frame = 0
Query:   86 SSRRPAGNKALDHQPFDLAAVQSLTGASKRQERG--GKAGADLKRFVGGARFWTGLESATRILVLLLLGAGVGGLLLPQGRAAIALAKYEAEYFRANSDRGVDSRARLEAFLLAEEVIPSRV---NGIGYTDHSGEEFAQV----SSSTDSTSSRGNREDSTEEMSGAKLTMDGVCGSGSVDQDGGECVAELEMGNGLD-DAVDEGVISAAAGWFLSHVERLVGWAHYFSTTVMPIGL-VNRTSCVPAIVLAVLVRLIVATIFAGARGALGLPAFPPAGGGSKPGMVLGLVLARFPSLGKLLAFGVFVMNLFADTTLVVAGTVLTLAVFLGWEQETGPVGYAGSLVGGVGRL---VLGVSDDDNNGDG--FKEL 443
            SSRRP GNKAL+ Q FDLAA+QSL+ A+     G  G A    KR +GG RFWTGLE  T+  +LLLLGAGVGGLLLP+ RAA+A AK+EAE+ +  +D    SR+RLE FL  +     R     G      + +EF  V    SSS+ S  S  N EDS E+       +DGV      +  G E V    MG     D   +G++S A  WFL+ V+ +VGWAHY S   MP G  V   SCV AI LA+ VRL+VA  F+G R  LGLPAFP A   SKPGMV+G+VLA  P+LGK+LA+G  V ++F+DT LVVAGTVLTLA+ L +E+  GP   AGS+ G +G       G  + D +G G   KEL
Sbjct:  214 SSRRPTGNKALEKQGFDLAAIQSLSRAAGTDNSGVGGAATPGRKRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKFEAEHMQGFAD----SRSRLELFLAGDGGSEGRNALDEGFDAGSTAADEFGDVGDAYSSSSGSFESAENTEDSEEDAK-----VDGV-----AEGRGDEAVLAATMGEEEGGDVGHDGMLSEATDWFLNFVDMVVGWAHYLSAVSMPWGGGVGEISCVSAIYLAIFVRLVVAVAFSGVRVMLGLPAFPAANPTSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLFSPSFQGSEEGDYSGGGGDLKEL 573          
BLAST of mRNA_H-elongata_contig14752.3219.1 vs. uniprot
Match: A0A6H5JKL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL1_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 6.500e-60
Identity = 150/337 (44.51%), Postives = 193/337 (57.27%), Query Frame = 0
Query:  119 GGKAGADLKRFVGGARFWTGLESATRILVLLLLGAGVGGLLLPQGRAAIALAKYEAEYFRANSDRGVDSRARLEAFLLAEEVIPSR-VNGIGYTDHS--GEEFAQVSSSTDSTSSRGNREDSTEEMSGAKLTMDGVCGSGSV-DQDGGECVAELEMGNGLDDAVDEGVISAAAGWFLSHVERLVGWAHYFSTTVMPI-GLVNRTSCVPAIVLAVLVRLIVATIFAGARGALGLPAFPPAGGGSKPGMVLGLVLARFPSLGKLLAFGVFVMNLFADTTLVVAGTVLTLAVFLGWEQETGPVGYAGSLVGGVGRL---VLGVSDDD----NNGDGFKEL 443
            GG A    KR +GG RFWTGLE  T+  +LLLLGAGVGGLLLP+ RAA+A AK+EA++ +  +D    SR+RLE FL  + V   R    +G+   S   +EF  V    D                      +       V ++ G E V    MG   ++A D+G++S A  WFL+ V+ +VGWAHY S   MP  G V   SCV AI LA+ VRL+VA  F+G R  LGLPAFP A   SKPGMV+G+VLA  P+LGK+LA+G  V ++F+DT LVVAGTVLTLA+ L +E+  GP   AGS+ G +G       G  + D      G G KEL
Sbjct:   13 GGAATPGRKRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKFEADHMQGFAD----SRSRLEFFLAGDGVSEGRKALDVGFDAGSTAADEFGDV---VDXXXXXXXXXXXXXXXXXXXXXXEEDAKVDDVAERRGDEAVLAATMGE--EEAGDDGLLSEATDWFLNFVDLVVGWAHYLSAVSMPWRGGVGEISCVSAIHLALFVRLVVAVAFSGVRVVLGLPAFPAAQSTSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLFSPSFQGSEEGDYSTGGGGGGLKEL 340          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14752.3219.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2W5_ECTSI6.860e-7547.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKL1_9PHAE6.500e-6044.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 360..382
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 142..161
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 319..340
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 383..388
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..141
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 341..359
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 162..318
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 389..406
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 407..443
NoneNo IPR availableTMHMMTMhelixcoord: 360..382
NoneNo IPR availableTMHMMTMhelixcoord: 389..406
NoneNo IPR availableTMHMMTMhelixcoord: 142..161
NoneNo IPR availableTMHMMTMhelixcoord: 323..345

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14752contigH-elongata_contig14752:2866..6889 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14752.3219.1mRNA_H-elongata_contig14752.3219.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14752 2866..7591 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14752.3219.1 ID=prot_H-elongata_contig14752.3219.1|Name=mRNA_H-elongata_contig14752.3219.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=444bp
MLKTAEAEFFGEKMGADVAEAKPAAVTQQAFFKPLPSASASAAAAAGSPP
SAEAMAQSKTAMDKSGTIAGSRKQSASGTASRGTASSRRPAGNKALDHQP
FDLAAVQSLTGASKRQERGGKAGADLKRFVGGARFWTGLESATRILVLLL
LGAGVGGLLLPQGRAAIALAKYEAEYFRANSDRGVDSRARLEAFLLAEEV
IPSRVNGIGYTDHSGEEFAQVSSSTDSTSSRGNREDSTEEMSGAKLTMDG
VCGSGSVDQDGGECVAELEMGNGLDDAVDEGVISAAAGWFLSHVERLVGW
AHYFSTTVMPIGLVNRTSCVPAIVLAVLVRLIVATIFAGARGALGLPAFP
PAGGGSKPGMVLGLVLARFPSLGKLLAFGVFVMNLFADTTLVVAGTVLTL
AVFLGWEQETGPVGYAGSLVGGVGRLVLGVSDDDNNGDGFKEL*
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