prot_H-elongata_contig14697.3186.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14697.3186.1
Unique Nameprot_H-elongata_contig14697.3186.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length67
Homology
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BLAST of mRNA_H-elongata_contig14697.3186.1 vs. uniprot
Match: D8LHI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 2.530e-26
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 0 
Query:    1 MSYLSFKGQDWGCMVQLFFDNTSILLGVLAVLFNMAFFGVPIDVIDEVVYKKIIPGMGLSLVFGNT 66
            MSYLSF G +WGCM QLFFDNTS LLGVL  +FNM FFGVPI++I+EVVY+KI+PG+G++LVFGNT
Sbjct:    5 MSYLSFGGVEWGCMSQLFFDNTSTLLGVLGAIFNMTFFGVPIEIINEVVYQKILPGLGVTLVFGNT 70
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BLAST of mRNA_H-elongata_contig14697.3186.1 vs. uniprot
Match: A0A8J9SX93_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SX93_PHATR)

HSP 1 Score: 62.0 bits (149), Expect = 3.560e-11
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 0 
Query:    7 KGQDWGCMVQLFFDNTSILLGVLAVLFNMAFFGVPIDVIDEVVYKKIIPGMGLSLVFGNT 66
             G D G   QLFFDN   LLGVL  + +M  FGV   VI+E V+ KI+PG+G+SL+ GN 
Sbjct:    2 NGADMGAWCQLFFDNLGTLLGVLIAVQDMENFGVSRGVINETVFGKIVPGVGISLLVGNV 61
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BLAST of mRNA_H-elongata_contig14697.3186.1 vs. uniprot
Match: A0A448ZC90_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZC90_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.150e-8
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 0 
Query:    7 KGQDWGCMVQLFFDNTSILLGVLAVLFNMAFFG---VPIDVIDEVVYKKIIPGMGLSLVFGN 65
             G DWG   QLFFDN   LLG L  +  +++ G   V  DV++++V+ KI PG+GL+LV GN
Sbjct:   44 SGGDWGSFTQLFFDNLGTLLGALYAIQGLSYMGDISVSEDVMNDIVWGKIAPGVGLTLVIGN 105
[Close]
BLAST of mRNA_H-elongata_contig14697.3186.1 vs. uniprot
Match: A0A7S4EKF1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKF1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.590e-7
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 0 
Query:    4 LSFKGQDWGCMVQLFFDNTSILLGVLAVLFNM----AFFGVPI--DVIDEVVYKKIIPGMGLSLVFGN 65
            ++  G DWG   QLFFDN S LLG L  +  +    AF  + +  DV++++++ KI PG+G++L+ GN
Sbjct:   41 MTMSGGDWGSFTQLFFDNLSTLLGALYAIQGLSSKVAFGDIAVSEDVMNDIIWAKIAPGVGVTLIIGN 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14697.3186.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LHI4_ECTSI2.530e-2674.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J9SX93_PHATR3.560e-1151.67Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A448ZC90_9STRA1.150e-846.77Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4EKF1_9STRA3.590e-739.71Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 46..66
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 24..45
NoneNo IPR availableTMHMMTMhelixcoord: 23..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14697contigH-elongata_contig14697:2965..3427 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14697.3186.1mRNA_H-elongata_contig14697.3186.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14697 2963..4118 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14697.3186.1 ID=prot_H-elongata_contig14697.3186.1|Name=mRNA_H-elongata_contig14697.3186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MSYLSFKGQDWGCMVQLFFDNTSILLGVLAVLFNMAFFGVPIDVIDEVVY
KKIIPGMGLSLVFGNT*
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