prot_H-elongata_contig14689.3182.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig14689.3182.1
Unique Name	prot_H-elongata_contig14689.3182.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	193

Homology

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BLAST of mRNA_H-elongata_contig14689.3182.1 vs. uniprot
Match: D7FQK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK9_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 9.160e-66
Identity = 103/169 (60.95%), Postives = 127/169 (75.15%), Query Frame = 0

Query:   25 CRRLRDTSELPYLRDSIKCLRIISGSFMVLLIPLFIGVAEDRSPLISPITSYGNGSSWNFGWGRPVVHFTLAFMGLFMDTHPAARTICVVGMFQAILFDTLSSYDLGTQIDCAASGRCALPPGHTLLGLRLLRARDLTSIMLATWALFLVSVLTLIIGYCRIWYTFRQL 193
            C R +   EL  L++ I C R +SG+F++LL PLF   A +  P+I+PITS+GNGSSWN+GWGRPV+HF L F+G+F+DTH AAR  C+VGM QAI+ DTLSSY LGTQIDC  SGRCA+P   TL GLRLL++RDL S+ LATWAL L   L+L+IG CR  Y FRQL
Sbjct:    9 CFRSKARYELSKLQELIVCYRCLSGAFILLLFPLFWVAASEARPVITPITSFGNGSSWNYGWGRPVLHFGLVFVGMFVDTHQAARLSCLVGMMQAIVLDTLSSYALGTQIDCVQSGRCAVPEHTTLSGLRLLQSRDLASVALATWALLLAYYLSLVIGMCRTRYNFRQL 177

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig14689.3182.1 vs. uniprot

BLAST of mRNA_H-elongata_contig14689.3182.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FQK9_ECTSI	9.160e-66	60.95	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 189..193
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 26..45
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 102..163
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 46..63
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 64..82
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 83..101
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 164..188
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..25
None	No IPR available	TMHMM	TMhelix		coord: 4..26
None	No IPR available	TMHMM	TMhelix		coord: 165..187
None	No IPR available	TMHMM	TMhelix		coord: 46..63

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig14689	contig	H-elongata_contig14689:6801..7379 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig14689.3182.1	mRNA_H-elongata_contig14689.3182.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig14689 6801..7382 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig14689.3182.1 ID=prot_H-elongata_contig14689.3182.1|Name=mRNA_H-elongata_contig14689.3182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
MTDVGMACVVGFVCFLIISTCDFYCRRLRDTSELPYLRDSIKCLRIISGS
FMVLLIPLFIGVAEDRSPLISPITSYGNGSSWNFGWGRPVVHFTLAFMGL
FMDTHPAARTICVVGMFQAILFDTLSSYDLGTQIDCAASGRCALPPGHTL
LGLRLLRARDLTSIMLATWALFLVSVLTLIIGYCRIWYTFRQL