prot_H-elongata_contig146503.3164.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig146503.3164.1
Unique Nameprot_H-elongata_contig146503.3164.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length156
Homology
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A6A4ZHD7_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZHD7_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.810e-32
Identity = 65/154 (42.21%), Postives = 100/154 (64.94%), Query Frame = 0
Query:    3 EAQASSKWPQWKRAIAREMDGQIARGVWHVVERPKGKTMLGTRVVFKRKFDKDGRIEKYKCRLVAQGFRQVIGIHYEESSSPTPAQASIRMVLRMVAALGWEARQLDVDKAYLKADVEEEIYVELPEAYR-DSRKQVGLLKKTMYGLVHTGLLW 155
            +A AS +  + ++A+ RE+DG +  G W VVERPK   ++  + VFK K+D+ G ++K+K RLVA+GF Q  G+ Y  + +P   QAS+R++  + A    E   LD  +AYL A  + +IY+ELPE +  D++K VGLL+K +YGL  +G+LW
Sbjct:  881 QAMASKEAIERRKAMMRELDGIVGNGTWEVVERPKHTNIVSHKWVFKVKYDQGGNVDKFKARLVARGFSQRYGVDYSNTYAPVIKQASVRLIYVLAAIFKCEITHLDFPQAYLNAKTDFDIYIELPEGFDVDTKKYVGLLRKGLYGLKQSGMLW 1034          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA)

HSP 1 Score: 122 bits (305), Expect = 2.490e-31
Identity = 58/149 (38.93%), Postives = 91/149 (61.07%), Query Frame = 0
Query:    9 KWPQWKRAIAREMDGQIARGVWHVVERPKGKTMLGTRVVFKRKFDKDGRIEKYKCRLVAQGFRQVIGIHYEESSSPTPAQASIRMVLRMVAALGWEARQLDVDKAYLKADVEEEIYVELPEAYR--DSRKQVGLLKKTMYGLVHTGLLW 155
            K   W +A+  EM+       W +V++P+ K  +G R +F  K   DG IE+YK RLVA+G+ Q  GI Y+E+ +P     ++R+VL + A  GW+  QLDV  A+L  ++EEE+Y+E+P+ ++  + R +V LLKK +YGL  +   W
Sbjct:    2 KLEHWTQAMKEEMNALERNSTWEIVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQSLRAW 150          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A401G6E6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G6E6_9APHY)

HSP 1 Score: 123 bits (308), Expect = 1.000e-29
Identity = 57/155 (36.77%), Postives = 97/155 (62.58%), Query Frame = 0
Query:    1 MGEAQASSKWPQWKRAIAREMDGQIARGVWHVVERPKGKTMLGTRVVFKRKFDKDGRIEKYKCRLVAQGFRQVIGIHYEESSSPTPAQASIRMVLRMVAALGWEARQLDVDKAYLKADVEEEIYVELPEAYRDSRKQVGLLKKTMYGLVHTGLLW 155
            +  A+ SS+WP+W+ A+  E++     G W +V+ P+G+T +G + V  +K +++G + K+K RLVA+G+ Q++G+ Y E+ SP     +IR +L + A L W+ +Q+DV  AYL   ++EEIY+   E + D   +V  ++KT+YGL   G  W
Sbjct:  235 LNNAKNSSEWPKWETAVQAELEQLDNMGTWELVDLPQGRTPVGNKWVLVKKTNREGEVIKFKARLVAKGYSQILGMDYTETYSPVVRLETIRAILGLAAILDWDIQQMDVKGAYLNGILKEEIYMRQLEGFSDGTHRVCRMRKTLYGLKQAGREW 389          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 122 bits (307), Expect = 1.830e-29
Identity = 60/145 (41.38%), Postives = 92/145 (63.45%), Query Frame = 0
Query:   12 QWKRAIAREMDGQIARGVWHVVERPKGKTMLGTRVVFKRKFDKDGRIEKYKCRLVAQGFRQVIGIHYEESSSPTPAQASIRMVLRMVAALGWEARQLDVDKAYLKADVEEEIYVELPEAYRDSRK-QVGLLKKTMYGLVHTGLLW 155
            +W+ A+A+E++       W VV+ P  K  +G + ++K K++ DG IE+YK RLVAQGF Q+ GI Y+E  SP     S+R  L +V A  WE  Q+DV+ A+L  D+EEE+Y++LPE ++ + K +V  L+K++YGL      W
Sbjct:  564 RWREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI)

HSP 1 Score: 122 bits (307), Expect = 1.860e-29
Identity = 59/157 (37.58%), Postives = 92/157 (58.60%), Query Frame = 0
Query:    3 EAQASSKWPQWKRAIAREMDGQIARGVWHVVERPKGKTMLGTRVVFKRKFDKDGRIEKYKCRLVAQGFRQVIGIHYEESSSPTPAQASIRMVLRMVAALGWEARQLDVDKAYLKADVEEEIYVELPEAYRDS----RKQVGLLKKTMYGLVHTGLLW 155
            EA+  S W +W +A+  +MD  +    W +V+ P G+  +G+R V+K K D++G+ +++K RLVAQGF QV G+ Y E+ +P     S+R++L + A  GW   Q+DV  AYL  D+EEE+Y+  P  Y       +  V  L+  +YGL  +G  W
Sbjct:  737 EARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVDVVTAYLNGDLEEEVYIRQPPGYEKGGSRRKNMVCKLRLPLYGLKQSGRQW 893          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 122 bits (307), Expect = 1.890e-29
Identity = 64/155 (41.29%), Postives = 96/155 (61.94%), Query Frame = 0
Query:    3 EAQASSKWPQWKRAIAREMDGQIARGVWHVVERPKGKTMLGTRVVFKRKFDKDGRIEKYKCRLVAQGFRQVIGIHYEESSSPTPAQASIRMVLRMVAALGWEARQLDVDKAYLKADVEEEIYVELP--EAYRDSRKQVGLLKKTMYGLVHTGLLW 155
            EA  S  WPQW++AI +EM        + +VE P+   ++G++ VF+ K + +G+IE YK RLVAQGF Q+ GI + ++ +P    ASIR++L + A   W+  Q+DV  AYL AD+EEEI+++ P  +A R     V LL+  +YGL  +G  W
Sbjct:  965 EAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSGRQW 1119          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 122 bits (305), Expect = 2.280e-29
Identity = 59/145 (40.69%), Postives = 92/145 (63.45%), Query Frame = 0
Query:   12 QWKRAIAREMDGQIARGVWHVVERPKGKTMLGTRVVFKRKFDKDGRIEKYKCRLVAQGFRQVIGIHYEESSSPTPAQASIRMVLRMVAALGWEARQLDVDKAYLKADVEEEIYVELPEAYRDSRK-QVGLLKKTMYGLVHTGLLW 155
            +W+ A+A+E++       W VV+ P  K  +G + ++K K++ DG IE+YK RLVAQGF Q+ GI Y+E+ SP     S+R  L +  A  WE  Q+DV+ A+L  D+EEE+Y++LPE ++ + K +V  L+K++YGL      W
Sbjct:   95 RWREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 114 bits (285), Expect = 4.140e-29
Identity = 58/151 (38.41%), Postives = 89/151 (58.94%), Query Frame = 0
Query:   13 WKRAIAREMDGQIARGVWHVVERPKGKTMLGTRVVFKRKFDKDGRIEKYKCRLVAQGFRQVIGIHYEESSSPTPAQASIRMVLRMVAALGWEARQLDVDKAYLKADVEEEIYVELPEAY--------RDSRKQVGLLKKTMYGLVHTGLLW 155
            WK+A+  E +       W +V+RP+GKT++G+R VF+ K   DG +E+ K RLVA+GF Q+ G HY E+ +     +SIR V+ + A    E  QLD   AYL  ++EEEIY+E+P+          +D   +V  ++K +YGL  +G +W
Sbjct:   32 WKKAMLEEYNSLEKNKTWTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSGRMW 182          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI)

HSP 1 Score: 121 bits (304), Expect = 4.740e-29
Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = 0
Query:    3 EAQASSKWPQWKRAIAREMDGQIARGVWHVVERPKGKTMLGTRVVFKRKFDKDGRIEKYKCRLVAQGFRQVIGIHYEESSSPTPAQASIRMVLRMVAALGWEARQLDVDKAYLKADVEEEIYVELPEAYRDSRKQVGLLKKTMYGLVHTGLLW 155
            EA+    WP W+ AI +E+      G W + + P G+  +G++ VFK K   DG ++KYK RLVAQGF Q  G+ Y+E+ +P    A++R+++ + A  GW A Q+DV  AYL  ++EEEIY+  P  Y +  K V  L K +YGL   G  W
Sbjct:  835 EAKRRPDWPHWETAIKKELASLSENGTWTLEDLPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQEGWLAHQMDVITAYLNGNLEEEIYMRAPPGYAEGDK-VCRLCKALYGLKQAGRTW 986          
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 121 bits (303), Expect = 6.220e-29
Identity = 66/159 (41.51%), Postives = 93/159 (58.49%), Query Frame = 0
Query:    1 MGEAQASSKWPQWKRAIAREMDGQIAR----GVWHVVERPKGKTMLGTRVVFKRKFDKDGRIEKYKCRLVAQGFRQVIGIHYEESSSPTPAQASIRMVLRMVAALGWEARQLDVDKAYLKADVEEEIYVELPEAYRDSRKQVGLLKKTMYGLVHTGLLW 155
            + EAQA+ +WP+WKRA    MD +IA+    G +   + P G+  +G R V++ K D DGRI +YK RLVAQGF Q  G+ Y E+ +P     S+R++L + A    E  Q DV  AYL AD++EEIY+  P  Y +    +  L+K +YGL   G  W
Sbjct:   18 LSEAQAAPEWPEWKRA----MDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQW 172          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146503.3164.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A4ZHD7_9STRA3.810e-3242.21Integrase catalytic domain-containing protein (Fra... [more]
A0A151RGT1_CAJCA2.490e-3138.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A401G6E6_9APHY1.000e-2936.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438E4T4_VITVI1.830e-2941.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A177U1E5_9BASI1.860e-2937.58Integrase catalytic domain-containing protein n=2 ... [more]
A0A401GQU1_9APHY1.890e-2941.29Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A438GNV2_VITVI2.280e-2940.69Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9Y7J8_LYGHE4.140e-2938.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A5C3E5T1_9BASI4.740e-2940.52Uncharacterized protein n=2 Tax=Ustilago trichopho... [more]
A0A1M2V3W8_TRAPU6.220e-2941.51Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 29..155
e-value: 4.9E-31
score: 108.2
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 11..148
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 11..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146503contigH-elongata_contig146503:275..742 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146503.3164.1mRNA_H-elongata_contig146503.3164.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig146503 254..1632 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig146503.3164.1 ID=prot_H-elongata_contig146503.3164.1|Name=mRNA_H-elongata_contig146503.3164.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MGEAQASSKWPQWKRAIAREMDGQIARGVWHVVERPKGKTMLGTRVVFKR
KFDKDGRIEKYKCRLVAQGFRQVIGIHYEESSSPTPAQASIRMVLRMVAA
LGWEARQLDVDKAYLKADVEEEIYVELPEAYRDSRKQVGLLKKTMYGLVH
TGLLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like