prot_H-elongata_contig145983.3140.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig145983.3140.1
Unique Nameprot_H-elongata_contig145983.3140.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length106
Homology
[Close]
BLAST of mRNA_H-elongata_contig145983.3140.1 vs. uniprot
Match: A0A6H5KJR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.020e-12
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 0 
Query:    1 GDQHGFFQNIKSVQLEETKKVKLQCVRDEGGTLLRDEGRIRERWVRFFRALLKAKSDILDPDIPKRLPQHSVASSLGIEPT-EEIGTAMKAMSNAKAVGPDGLLAEL 106
            GDQ GF++++K + +E  +    Q  +DE G ++RD   IR+RW R+F  LL  KS  +D     ++ Q      L   P+  E+  A++ M+N KAVGPD L AEL
Sbjct:   35 GDQAGFYRHLKMIDVEGKRSFTSQNTKDEDGKVIRDPTFIRQRWARWFHXLLNTKSPTIDLHAADKVKQWPTYVPLDDIPSLPEVEEAVREMANRKAVGPDDLPAEL 141
[Close]
BLAST of mRNA_H-elongata_contig145983.3140.1 vs. uniprot
Match: UPI001E26F6F4 (craniofacial development protein 2-like n=1 Tax=Melitaea cinxia TaxID=113334 RepID=UPI001E26F6F4)

HSP 1 Score: 54.7 bits (130), Expect = 2.090e-6
Identity = 31/90 (34.44%), Postives = 54/90 (60.00%), Query Frame = 0 
Query:   23 LQCVRDEGGTLLRDEGRIRERWVRFFRALLKAKSD---ILDPDIPKRLPQHSVASSLGIEPT---EEIGTAMKAMSNAKAVGPDGLLAEL 106
            ++C++DE G +L D   I+ERW R+F +L+  +++   +L+          +V S+ G+      EE+  A+++M N KAVGPDG+ AE+
Sbjct:  423 MKCIKDEAGKILTDNEEIKERWKRYFNSLMNEENEWSGVLE----------NVRSNEGMVKEVSIEEVKMAVQSMKNGKAVGPDGIPAEV 502
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145983.3140.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJR4_9PHAE1.020e-1238.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001E26F6F42.090e-634.44craniofacial development protein 2-like n=1 Tax=Me... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145983contigH-elongata_contig145983:1320..1637 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145983.3140.1mRNA_H-elongata_contig145983.3140.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig145983 1320..1637 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig145983.3140.1 ID=prot_H-elongata_contig145983.3140.1|Name=mRNA_H-elongata_contig145983.3140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
GDQHGFFQNIKSVQLEETKKVKLQCVRDEGGTLLRDEGRIRERWVRFFRA
LLKAKSDILDPDIPKRLPQHSVASSLGIEPTEEIGTAMKAMSNAKAVGPD
GLLAEL
back to top