prot_H-elongata_contig145975.3139.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig145975.3139.1
Unique Nameprot_H-elongata_contig145975.3139.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length179
Homology
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.570e-28
Identity = 66/178 (37.08%), Postives = 107/178 (60.11%), Query Frame = 0
Query:    4 VLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 179
            +L Y+ RT DLGI +  G   G    + V   ADY +    RRSVS G VM  GG +SWFSR  K    +++E+EYV+LA+++ E+ FLRQV+  +     +  I + EDN+GA + A+N  S+  ++H++++HH +R+ +    + + +V S  QHAD LT +++   FE H  +++
Sbjct:   76 ILGYVVRTSDLGITFRRGSVAGLS--MEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVM 251          
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 7.460e-28
Identity = 68/178 (38.20%), Postives = 105/178 (58.99%), Query Frame = 0
Query:    4 VLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 179
            +L Y+ RT DLGI +  G   G    + V   ADY +    RRSVS G VM  GG ISWFSR  K    +++E+EYV+LA+++ E+ FLRQV   M     +  I + EDN+GA + A+N  S+  ++H++++HH +R+ +    + + +V S  QHAD LT ++    FE H  +++
Sbjct:  260 ILGYVVRTSDLGITFRRGSVAGLSMEVFV--DADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVM 435          
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.400e-27
Identity = 68/178 (38.20%), Postives = 105/178 (58.99%), Query Frame = 0
Query:    4 VLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 179
            +L Y+ RT DLGI +  G   G    + V   ADY +    RRSVS G VM  GG ISWFSR  K    +++E+EYV+LA+++ E+ FLRQV   M     +  I + EDN+GA + A+N  S+  ++H++++HH +R+ +    + + +V S  QHAD LT ++    FE H  +++
Sbjct:  434 ILGYVVRTSDLGITFRRGSVAGLSMEVFV--DADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVM 609          
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.090e-26
Identity = 67/178 (37.64%), Postives = 105/178 (58.99%), Query Frame = 0
Query:    4 VLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 179
            +L Y+ RT DLGI +  G   G    + V   ADY +    RRSVS G VM  GG ISWFSR  K    +++E+EYV+LA+++ E+ FLRQV   M     +  I + EDN+GA + A+N  S+  ++H++++HH +R+ +    + + +V S  QHA+ LT ++    FE H  +++
Sbjct:  955 ILGYVVRTSDLGITFRRGSVAGLSMEVFV--DADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRNYVM 1130          
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.390e-26
Identity = 68/182 (37.36%), Postives = 111/182 (60.99%), Query Frame = 0
Query:    1 AAAVLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV--AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 179
            A ++L Y  RT   GI +  G   G+  +  V  +ADY +    RRSVS G VM +GGAI+WFS+  K    +++++EYVA+A+M  E+ FLRQV   M LP ++   I ++EDNEGA + A++  S+  ++H++++HH +R  ++   V + +V S  QHAD LT ++  + F  H  +++
Sbjct:  255 ALSILGYAVRTSSFGISFQSGTVSGFSLITFV--NADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFM-LPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPEREFVFHRDYVM 433          
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.850e-26
Identity = 69/182 (37.91%), Postives = 110/182 (60.44%), Query Frame = 0
Query:    1 AAAVLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV--AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 179
            A ++L Y +RT  LGI +  G   G+  +  V   ADY +    RRSVS G VM +GGAI+WFS+       ++++SEYVA+A+M  E+ FLRQV   M LP ++   I ++EDNEGA + A++  S   ++H++++HH +R  ++   V + +V S  QHAD LT ++  + F  H  +++
Sbjct:  574 ALSILGYAFRTSSLGISFQRGTVSGFTLIAFV--DADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLRQVWRFM-LPKELRPCIPLYEDNEGAIQIAKHPISKSNSKHIDVRHHFLRQLVDEKEVELIHVASKYQHADFLTKALPEREFVSHRDYVM 752          
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.860e-26
Identity = 67/181 (37.02%), Postives = 102/181 (56.35%), Query Frame = 0
Query:    1 AAAVLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 179
            A  +L Y  RT   GI +  G   G+   +     AD+ +    RRSVS G V   GGA+SWFSR  K    +++E+EYVAL E+V  + FLRQ+   M   + +  I + EDN+GA + A+N  S+  ++H++++HH +R+ +E   + V +V S  Q AD LT S+    FE H  F++
Sbjct:   35 AMDILGYARRTSHFGISFQRGTVEGFS--LQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVM 213          
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 5.580e-26
Identity = 64/181 (35.36%), Postives = 105/181 (58.01%), Query Frame = 0
Query:    1 AAAVLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 179
            A  +L Y+ RT  +GI +  G   G    + V   ADY +    RRSVS G VM  GG ++WFSR  K    +++E+EYVA+A+++ E+ FLRQV   M     +  I + EDN+GA + A N  ++  ++H++++HH +R+ +E   + +  V +  QHAD LT ++  ++F  H  F++
Sbjct:  140 ALGILGYVRRTSWMGITFERGVVTGMSMQVFV--DADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVM 318          
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 6.300e-26
Identity = 58/146 (39.73%), Postives = 91/146 (62.33%), Query Frame = 0
Query:   35 ADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 179
            AD+ +    RRSVS G V   GG++SWFSR  K    +++E+EYVAL ++V E+ FLRQ+   M   + +  I I EDN+GA + A+N  S+  ++H++++HH +R+ +E   + V +V S  Q AD LT S+   +FE H  F++
Sbjct:   79 ADFASKAANRRSVSGGIVTCGGGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDSFESHREFVM 224          
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 8.550e-26
Identity = 58/146 (39.73%), Postives = 90/146 (61.64%), Query Frame = 0
Query:   35 ADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 179
            AD+ +    RRSVS G V   GGA+SWFSR  K    +++E+EYVAL ++V E+ FLRQ+   M   + +  I + EDN+GA + A+N  S+  ++H++++HH +R+ +E   + V +V S  Q AD LT S+    FE H  F++
Sbjct:   63 ADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVM 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK6_9PHAE2.570e-2837.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE7.460e-2838.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE2.400e-2738.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE1.090e-2637.64Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JRZ9_9PHAE1.390e-2637.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWA6_9PHAE2.850e-2637.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KEZ8_9PHAE4.860e-2637.02Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE5.580e-2635.36Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIJ7_9PHAE6.300e-2639.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW6_9PHAE8.550e-2639.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 35..143
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 35..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145975contigH-elongata_contig145975:772..1308 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145975.3139.1mRNA_H-elongata_contig145975.3139.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig145975 772..1308 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig145975.3139.1 ID=prot_H-elongata_contig145975.3139.1|Name=mRNA_H-elongata_contig145975.3139.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
AAAVLQYLWRTRDLGIIYVGEPGGWDQVISVGRHADYGTWPDTRRSVSEG
AVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTL
PIDVAIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVE
YVRSGEQHADILTNSVDVKTFEKHARFLL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like