prot_H-elongata_contig145741.3126.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig145741.3126.1
Unique Nameprot_H-elongata_contig145741.3126.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length52
Homology
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BLAST of mRNA_H-elongata_contig145741.3126.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 9.360e-18
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 0 
Query:    1 MPGGGSRDSQRLVGYARLFAELYNYAVVGSPVIFETLHLLLDSGHQV 47
            +PGGG  +SQRLVGYARL  ELYNYAVVGSP IFETLHLL+DSGH+V
Sbjct: 1165 LPGGGGGESQRLVGYARLLGELYNYAVVGSPTIFETLHLLVDSGHEV 1211
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BLAST of mRNA_H-elongata_contig145741.3126.1 vs. uniprot
Match: A0A1Y1HM27_KLENI (Regulator of nonsense transcripts 2 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HM27_KLENI)

HSP 1 Score: 48.5 bits (114), Expect = 3.940e-5
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 0 
Query:    3 GGGSRDSQRLVGYARLFAELYNYAVVGSPVIFETLHLLLDSG 44
            GGG    QR V   R   ELYNY +V SP++F+TL+L+L+ G
Sbjct:  723 GGGLARHQRRVAQMRFLGELYNYRIVDSPIVFDTLYLMLNYG 764
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145741.3126.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEF3_ECTSI9.360e-1880.85Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A1Y1HM27_KLENI3.940e-550.00Regulator of nonsense transcripts 2 n=1 Tax=Klebso... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016021MIF4G-like domain superfamilyGENE3D1.25.40.180coord: 4..49
e-value: 1.3E-9
score: 39.6
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 9..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145741contigH-elongata_contig145741:472..627 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145741.3126.1mRNA_H-elongata_contig145741.3126.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig145741 472..627 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig145741.3126.1 ID=prot_H-elongata_contig145741.3126.1|Name=mRNA_H-elongata_contig145741.3126.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MPGGGSRDSQRLVGYARLFAELYNYAVVGSPVIFETLHLLLDSGHQVGHG
L*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016021MIF4-like_sf
IPR016024ARM-type_fold