prot_H-elongata_contig145627.3120.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig145627.3120.1
Unique Nameprot_H-elongata_contig145627.3120.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length101
Homology
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.080e-35
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0
Query:    1 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIG 70
            M+EG TQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKY +KNEQDRFYPTTLGLALVDGYDNIG
Sbjct:  292 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIG 361          
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A158R560_9BILA (DNA topoisomerase n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A158R560_9BILA)

HSP 1 Score: 101 bits (251), Expect = 7.990e-23
Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 0
Query:    1 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNGQRKNQVK 79
            M++G TQ PPLL+E+DLIGLM++ GIGTDAT AEHI+KI++R+Y   N+++RF P  LGLALVDGYDN+G    K  ++
Sbjct:  478 MKDGYTQPPPLLNEADLIGLMEKYGIGTDATHAEHIEKIKKRQYATLNKENRFLPGYLGLALVDGYDNMGFAMSKPHLR 556          
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A0N5A5K3_PARTI (DNA topoisomerase n=1 Tax=Parastrongyloides trichosuri TaxID=131310 RepID=A0A0N5A5K3_PARTI)

HSP 1 Score: 99.0 bits (245), Expect = 5.160e-22
Identity = 47/82 (57.32%), Postives = 64/82 (78.05%), Query Frame = 0
Query:    1 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNGQRKNQVKNVL 82
            M EG T APPLLSESDLI LMD+ GIGTDAT AEHI+ I++RKY + N+++RFYP+ +GLALV+ Y+++G    K  +++ L
Sbjct:  494 MPEGTTTAPPLLSESDLISLMDKFGIGTDATHAEHIETIKKRKYAMLNKENRFYPSPIGLALVESYNHLGYQLSKPNLRSDL 575          
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A090LCN1_STRRB (DNA topoisomerase n=1 Tax=Strongyloides ratti TaxID=34506 RepID=A0A090LCN1_STRRB)

HSP 1 Score: 98.6 bits (244), Expect = 7.040e-22
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 0
Query:    1 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNGQRKNQVKNVL 82
            + EG+T APPLL+E+DLI LMD+ GIGTDAT AEHI+ IQ+RKYC  N   RF P++LGLALV+ Y+N+G    K  +++ L
Sbjct:  493 IHEGMTTAPPLLNEADLISLMDKYGIGTDATHAEHIETIQKRKYCSLNNDRRFVPSSLGLALVESYNNLGYQLSKPDLRSDL 574          
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: F1L3P3_ASCSU (DNA topoisomerase n=1 Tax=Ascaris suum TaxID=6253 RepID=F1L3P3_ASCSU)

HSP 1 Score: 97.8 bits (242), Expect = 9.180e-22
Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 0
Query:    1 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNGQRKNQVK 79
            M EG TQ PPLLSE+DLI LMD+ GIGTDAT AEHI+ I+QR+Y   N + RF P  LGLALVDGYD +G    K  ++
Sbjct:  167 MSEGHTQPPPLLSEADLIALMDKYGIGTDATHAEHIETIKQRRYAALNAEKRFVPGYLGLALVDGYDRMGYAMSKPHMR 245          
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A183UA66_TOXCA (DNA topoisomerase n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183UA66_TOXCA)

HSP 1 Score: 98.2 bits (243), Expect = 9.760e-22
Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 0
Query:    1 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNGQRKNQVK 79
            M EG TQ PPLLSE+DLI LMD+ GIGTDAT AEHI+ I+QR+Y   N + RF P  LGLALVDGYD +G    K  ++
Sbjct:  736 MNEGHTQPPPLLSEADLIALMDKYGIGTDATHAEHIETIKQRRYAALNNEKRFVPGYLGLALVDGYDRMGYAMSKPHMR 814          
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A0B2W574_TOXCA (DNA topoisomerase n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2W574_TOXCA)

HSP 1 Score: 98.2 bits (243), Expect = 9.840e-22
Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 0
Query:    1 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNGQRKNQVK 79
            M EG TQ PPLLSE+DLI LMD+ GIGTDAT AEHI+ I+QR+Y   N + RF P  LGLALVDGYD +G    K  ++
Sbjct:  561 MNEGHTQPPPLLSEADLIALMDKYGIGTDATHAEHIETIKQRRYAALNNEKRFVPGYLGLALVDGYDRMGYAMSKPHMR 639          
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: L1K3I3_GUITC (DNA topoisomerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K3I3_GUITC)

HSP 1 Score: 97.4 bits (241), Expect = 1.760e-21
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0
Query:    1 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIG 70
            M EG TQAPPLLSE+DLI LMD  GIGTDATIAEHI K+QQR Y +K++  +F PT+LG +LV  Y+ IG
Sbjct:  478 MTEGRTQAPPLLSEADLISLMDSHGIGTDATIAEHITKVQQRDYAIKSDSQQFSPTSLGKSLVTSYEAIG 547          
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A139APE3_GONPJ (DNA topoisomerase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139APE3_GONPJ)

HSP 1 Score: 97.1 bits (240), Expect = 2.470e-21
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 0
Query:    1 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIGNG 72
            ++E  TQ P LL+E+DLI LMD+ GIGTDATIA+HI+ IQ RKY +K+   RF PTTLG AL++GYDN+G G
Sbjct:  471 IDESSTQPPSLLTEADLITLMDKSGIGTDATIAQHIKTIQDRKYAVKDGNGRFSPTTLGFALIEGYDNMGFG 542          
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Match: A0A835YM61_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM61_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.150e-20
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 0
Query:    1 MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQDRFYPTTLGLALVDGYDNIG 70
            + EG T+ PPLLSESDLI LMD   IGTDATIAEHI+KIQ+R Y  +  + RF PT LGLALVDGY+ +G
Sbjct:  308 LTEGRTEPPPLLSESDLIQLMDANRIGTDATIAEHIKKIQERGYAERCHESRFRPTVLGLALVDGYEALG 377          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145627.3120.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP7_ECTSI1.080e-3594.29DNA topoisomerase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A158R560_9BILA7.990e-2359.49DNA topoisomerase n=1 Tax=Syphacia muris TaxID=451... [more]
A0A0N5A5K3_PARTI5.160e-2257.32DNA topoisomerase n=1 Tax=Parastrongyloides tricho... [more]
A0A090LCN1_STRRB7.040e-2257.32DNA topoisomerase n=1 Tax=Strongyloides ratti TaxI... [more]
F1L3P3_ASCSU9.180e-2260.76DNA topoisomerase n=1 Tax=Ascaris suum TaxID=6253 ... [more]
A0A183UA66_TOXCA9.760e-2260.76DNA topoisomerase n=1 Tax=Toxocara canis TaxID=626... [more]
A0A0B2W574_TOXCA9.840e-2260.76DNA topoisomerase n=1 Tax=Toxocara canis TaxID=626... [more]
L1K3I3_GUITC1.760e-2165.71DNA topoisomerase n=1 Tax=Guillardia theta (strain... [more]
A0A139APE3_GONPJ2.470e-2162.50DNA topoisomerase n=1 Tax=Gonapodya prolifera (str... [more]
A0A835YM61_9STRA2.150e-2065.71DNA topoisomerase (Fragment) n=1 Tax=Tribonema min... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013824DNA topoisomerase, type IA, central region, subdomain 1GENE3D1.10.460.10coord: 2..95
e-value: 3.4E-27
score: 97.1
IPR013497DNA topoisomerase, type IA, centralPFAMPF01131Topoisom_baccoord: 2..69
e-value: 2.7E-19
score: 69.5
IPR000380DNA topoisomerase, type IAPANTHERPTHR11390PROKARYOTIC DNA TOPOISOMERASEcoord: 1..71
NoneNo IPR availablePANTHERPTHR11390:SF21DNA TOPOISOMERASE 3-ALPHAcoord: 1..71
IPR023405DNA topoisomerase, type IA, core domainSUPERFAMILY56712Prokaryotic type I DNA topoisomerasecoord: 2..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145627contigH-elongata_contig145627:527..1594 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145627.3120.1mRNA_H-elongata_contig145627.3120.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig145627 527..1609 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig145627.3120.1 ID=prot_H-elongata_contig145627.3120.1|Name=mRNA_H-elongata_contig145627.3120.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MEEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYCLKNEQ
DRFYPTTLGLALVDGYDNIGNGQRKNQVKNVLCRNCRMSFSQQRLSHSIF
R
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013824Topo_IA_cen_sub1
IPR013497Topo_IA_cen
IPR000380Topo_IA
IPR023405Topo_IA_core_domain