prot_H-elongata_contig145490.3110.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig145490.3110.1
Unique Nameprot_H-elongata_contig145490.3110.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length66
Homology
BLAST of mRNA_H-elongata_contig145490.3110.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.330e-22
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0
Query:    2 DPEAKIESEVLRASLRFCRSRYPSIHLAADVLSGLARYQDRVAVKAVDMVLEELRRGIE 60
            DPEA +ESEVLRASLR CRSRYP IHLAADVLSGLAR+QDRVAVKAVD VLE + R IE
Sbjct: 1106 DPEADVESEVLRASLRLCRSRYPCIHLAADVLSGLARHQDRVAVKAVDAVLEAMHRAIE 1164          
BLAST of mRNA_H-elongata_contig145490.3110.1 vs. uniprot
Match: K8YVG1_NANGC (Regulator of nonsense transcripts 2 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVG1_NANGC)

HSP 1 Score: 54.3 bits (129), Expect = 6.350e-7
Identity = 24/58 (41.38%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    5 AKIESEVLRASLRFCRSRYPSIHLAADVLSGLARYQDRVAVKAVDMVLEELRRGIEAS 62
            +++E   LR+ L+  R ++ ++H  ADV++GL +Y + +AV  VD VLEEL+RG+E +
Sbjct:  236 SELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETA 293          
BLAST of mRNA_H-elongata_contig145490.3110.1 vs. uniprot
Match: W7TWK6_9STRA (Regulator of nonsense transcripts 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWK6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.480e-7
Identity = 24/58 (41.38%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    5 AKIESEVLRASLRFCRSRYPSIHLAADVLSGLARYQDRVAVKAVDMVLEELRRGIEAS 62
            +++E   LR+ L+  R ++ ++H  ADV++GL +Y + +AV  VD VLEEL+RG+E +
Sbjct:  232 SELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETA 289          
BLAST of mRNA_H-elongata_contig145490.3110.1 vs. uniprot
Match: A0A4D9D616_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D616_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.550e-7
Identity = 24/58 (41.38%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    5 AKIESEVLRASLRFCRSRYPSIHLAADVLSGLARYQDRVAVKAVDMVLEELRRGIEAS 62
            +++E   LR+ L+  R ++ ++H  ADV++GL +Y + +AV  VD VLEEL+RG+E +
Sbjct:  762 SELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETA 819          
BLAST of mRNA_H-elongata_contig145490.3110.1 vs. uniprot
Match: A0A2P5B6J7_PARAD (26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5B6J7_PARAD)

HSP 1 Score: 52.8 bits (125), Expect = 2.290e-6
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 0
Query:    3 PEAKIESEVLRASLRFCRSRYPSIHLAADVLSGLARYQDRVAVKAVD---------MVLEELRRGIEASDEGL 66
            P ++ ES +L+  ++  R +Y  IHL A + +GL+RY D  AV  VD         +VLEE+R G+E +D G+
Sbjct:  703 PWSECESYLLKCFMKVHRGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVPSSFPENLVLEEIRLGLELNDYGM 775          
BLAST of mRNA_H-elongata_contig145490.3110.1 vs. uniprot
Match: A0A371H0E6_MUCPR (Regulator of nonsense transcripts UPF2 (Fragment) n=10 Tax=Phaseoleae TaxID=163735 RepID=A0A371H0E6_MUCPR)

HSP 1 Score: 50.4 bits (119), Expect = 1.500e-5
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 0
Query:    3 PEAKIESEVLRASLRFCRSRYPSIHLAADVLSGLARYQDRVAVKAVD-MVLEELRRGIEASDEGL 66
            P  + E  +L+  ++  + +Y  IHL A + +GL+RY D  AV  VD +VLEE+R G+E +D G+
Sbjct:  684 PWNECEPYLLKCFMKVHKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVVLEEIRVGLELNDYGM 748          
BLAST of mRNA_H-elongata_contig145490.3110.1 vs. uniprot
Match: A0A2B4S2I7_STYPI (Regulator of nonsense transcripts 2 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S2I7_STYPI)

HSP 1 Score: 49.7 bits (117), Expect = 2.790e-5
Identity = 23/59 (38.98%), Postives = 39/59 (66.10%), Query Frame = 0
Query:    4 EAKIESEVLRASLRFCRSRYPSIHLAADVLSGLARYQDRVAVKAVDMVLEELRRGIEAS 62
            E ++   V++  +R    +Y S+H AA++L+GLA+Y + V +  VD VLEE+R G+E +
Sbjct:  338 EPQVALYVIKCLIRVWNIKYNSVHCAANLLAGLAQYNEDVGLYVVDGVLEEIRLGMETN 396          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145490.3110.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LEF3_ECTSI2.330e-2283.05Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
K8YVG1_NANGC6.350e-741.38Regulator of nonsense transcripts 2 (Fragment) n=1... [more]
W7TWK6_9STRA6.480e-741.38Regulator of nonsense transcripts 2 n=2 Tax=Nannoc... [more]
A0A4D9D616_9STRA6.550e-741.38Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2P5B6J7_PARAD2.290e-638.3626S proteasome regulatory complex, non-ATPase subc... [more]
A0A371H0E6_MUCPR1.500e-540.00Regulator of nonsense transcripts UPF2 (Fragment) ... [more]
A0A2B4S2I7_STYPI2.790e-538.98Regulator of nonsense transcripts 2 n=1 Tax=Stylop... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016021MIF4G-like domain superfamilyGENE3D1.25.40.180coord: 1..66
e-value: 1.2E-10
score: 43.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145490contigH-elongata_contig145490:409..606 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145490.3110.1mRNA_H-elongata_contig145490.3110.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig145490 409..606 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig145490.3110.1 ID=prot_H-elongata_contig145490.3110.1|Name=mRNA_H-elongata_contig145490.3110.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
KDPEAKIESEVLRASLRFCRSRYPSIHLAADVLSGLARYQDRVAVKAVDM
VLEELRRGIEASDEGL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016021MIF4-like_sf