prot_H-elongata_contig14536.3107.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14536.3107.1
Unique Nameprot_H-elongata_contig14536.3107.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length194
Homology
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BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: D7FW26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW26_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 3.500e-32
Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = 0 
Query:    1 MVASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGR-AFLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYDGDSEECFRSATSIIFIYLVVFQFIFFSWGFHALGNNNALELNISRQS 132
            M A  G+TLT  +L+D+WQ+ V  S TI  S   + L GR +F RP+ RR F P  LAIAFPN+  FPLLL+++LC+Q+ IN D+D D  ECF  AT +IFIY+VV+Q  F+SWGF+ALG ++ LE  ++ ++
Sbjct:   59 MTAGTGATLTPGTLQDAWQLVVTGSFTIGFSGVVAWLVGRVSFRRPEDRRAFRPAALAIAFPNSAGFPLLLVDALCEQDYINSDFDDDEVECFTQATGMIFIYVVVWQVWFYSWGFYALGQDDELERKLAGEA 191
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BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Match: A0A835Z6D5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.570e-17
Identity = 49/123 (39.84%), Postives = 75/123 (60.98%), Query Frame = 0 
Query:    3 ASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGRAFLRPQARREFVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYDGDSEECFRSATSIIFIYLVVFQFIFFSWGFHALGNNNALE 125
            AS+G+ L+ S L +   + VA ++   +S+       +  L P   R F  V++A+ F N G+ PLL MESLC Q+ +N DYDG + ECF +ATS+IF+YL+ +   F+SWGF+ L   + L+
Sbjct:   16 ASMGANLSTSLLLEYSPLLVADTVIRAISWVVITACEK--LLPVEPRLFKAVKIAVLFCNVGSIPLLYMESLCDQDIVNADYDGSASECFAAATSMIFVYLITWHIWFYSWGFYELAKADDLD 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14536.3107.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW26_ECTSI3.500e-3250.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z6D5_9STRA2.570e-1739.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004776Membrane transport proteinPFAMPF03547Mem_transcoord: 3..138
e-value: 1.9E-6
score: 26.6
NoneNo IPR availablePANTHERPTHR31651FAMILY NOT NAMEDcoord: 3..134
NoneNo IPR availablePANTHERPTHR31651:SF5PROTEIN PIN-LIKES 1coord: 3..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 98..118
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 119..193
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..70
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 71..97
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 40..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availableTMHMMTMhelixcoord: 98..120
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14536contigH-elongata_contig14536:1516..3219 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14536.3107.1mRNA_H-elongata_contig14536.3107.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14536 189..3219 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14536.3107.1 ID=prot_H-elongata_contig14536.3107.1|Name=mRNA_H-elongata_contig14536.3107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
MVASLGSTLTLSSLRDSWQVAVAASLTIFVSFATSELFGRAFLRPQARRE
FVPVQLAIAFPNAGAFPLLLMESLCQQEAINIDYDGDSEECFRSATSIIF
IYLVVFQFIFFSWGFHALGNNNALELNISRQSTDLGGSTGVVEESFKTKR
GDGLTQANVDVVSNSVQNTEEYNKIPIDTRDGSMALMPAVEEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004776Mem_trans