prot_H-elongata_contig14477.3075.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14477.3075.1
Unique Nameprot_H-elongata_contig14477.3075.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length358
Homology
[Close]
BLAST of mRNA_H-elongata_contig14477.3075.1 vs. uniprot
Match: D7FI56_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI56_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.230e-49
Identity = 170/425 (40.00%), Postives = 216/425 (50.82%), Query Frame = 0 
Query:    1 FSCKVCSNLLRDNVECSSCHNLFCREHLRINEATDSSPCPCKTCAFAKVP-------------------QPLLSFLPNIPVQRMADAVPSRCDGCGKSFSWGDLAKHACDRQTVVCEYASWGCSWKGQRQHRPQHLASSTCPGQLARAEHEVAKTSGXXXXXXXXXXTVCKRKEAIEIRAVAAETRCQELEVK---------VAAAEKSLREKD--AVIAKQTLTMETAVKLKAKAGERADAAGGRIKKSXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------TSVDIQQQLLGAMFTPRVATSSKT--------------QQGTAAGSPTASAXXXXSI--QQQQKQQTRSDATGKIVSTSDVAR-----PQS---VGTDAGCQAPVPATEACLKPYLERPHALLEKKIVVFWPR 357
            FSC+ C NLLRD VEC +CH+LFCREHL +++   +SPCPC+ C+ A +                     P  +FLPNIP+QR+ADAVPSRCDGCG S SWG+L +HACD+Q V C     GCSW G+R  R  H ASSTCPG+LA A+ E  +                 R EA  +RA                      +AAAE+ L+E+D  A   +  +T  TA                     XXXXXXXXXXXXXXXXXXXXXXXXXXXX               ++     L  A F+P+ AT+                 ++ + AGS  A+     ++      +   R  A G + +   +AR     P++   V  D   QAPVPA EACLKPYLERP +LLEKK+VVFWPR
Sbjct:  114 FSCRACGNLLRDCVECPTCHSLFCREHLVVDKQNGTSPCPCEPCSLAPIATTLSAASTXXXXXXXRAHHHPREAFLPNIPLQRIADAVPSRCDGCGISLSWGELGRHACDQQLVPCGRRQHGCSWFGKRHEREAHEASSTCPGRLALAQAEALEA----------------RSEAARLRAAXXXXXXXXXXXXXXXXXXXXXLAAAERCLQERDQEAAALRGKITTMTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAMPFAAILNRAGFSPQTATTXXXXXXAPVRLPLAVPDRKKSGAGSRAAAIATTQTVVPSTASRASGRGTAKGTLSAAVQMARAGGSPPRASAGVMMDTASQAPVPAVEACLKPYLERPSSLLEKKVVVFWPR 522
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14477.3075.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI56_ECTSI2.230e-4940.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 154..188
NoneNo IPR availableCOILSCoilCoilcoord: 126..146
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 64..117
e-value: 9.4E-6
score: 27.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14477contigH-elongata_contig14477:224..1297 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14477.3075.1mRNA_H-elongata_contig14477.3075.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14477 224..1297 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14477.3075.1 ID=prot_H-elongata_contig14477.3075.1|Name=mRNA_H-elongata_contig14477.3075.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=358bp
FSCKVCSNLLRDNVECSSCHNLFCREHLRINEATDSSPCPCKTCAFAKVP
QPLLSFLPNIPVQRMADAVPSRCDGCGKSFSWGDLAKHACDRQTVVCEYA
SWGCSWKGQRQHRPQHLASSTCPGQLARAEHEVAKTSGEIASVRAELATV
CKRKEAIEIRAVAAETRCQELEVKVAAAEKSLREKDAVIAKQTLTMETAV
KLKAKAGERADAAGGRIKKSGGSSHAARESSSTQTSRYHPAATTSTTSTS
VDIQQQLLGAMFTPRVATSSKTQQGTAAGSPTASAPTASSIQQQQKQQTR
SDATGKIVSTSDVARPQSVGTDAGCQAPVPATEACLKPYLERPHALLEKK
IVVFWPR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD