prot_H-elongata_contig144727.3074.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig144727.3074.1
Unique Nameprot_H-elongata_contig144727.3074.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length52
Homology
[Close]
BLAST of mRNA_H-elongata_contig144727.3074.1 vs. uniprot
Match: D7FZL9_ECTSI (XRRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL9_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 8.100e-15
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 0 
Query:    6 YEEGKIVHVTEIPESGVSRESLRGALKPYGNVLYVDFSFGDREAWIR 52
            YE GKI+H+  IPESGVSRESL+ A++ +G  LYVDFSFG REAWIR
Sbjct:  161 YEAGKIIHIAGIPESGVSRESLKNAVESFGTALYVDFSFGGREAWIR 207
[Close]
BLAST of mRNA_H-elongata_contig144727.3074.1 vs. uniprot
Match: A0A6H5JWB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB6_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 9.920e-11
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0 
Query:   17 IPESGVSRESLRGALKPYGNVLYVDFSFGDREAWIR 52
            IPESGVSRESL+ A++ +G  LY+DFSFG REAWIR
Sbjct:    6 IPESGVSRESLKQAVESFGTALYIDFSFGAREAWIR 41
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144727.3074.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZL9_ECTSI8.100e-1570.21XRRM domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JWB6_9PHAE9.920e-1172.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014886La protein, RNA-binding domainPFAMPF08777RRM_3coord: 9..52
e-value: 8.0E-6
score: 25.8
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..52
e-value: 4.3E-11
score: 44.6
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144727contigH-elongata_contig144727:284..1357 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144727.3074.1mRNA_H-elongata_contig144727.3074.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig144727 284..1357 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig144727.3074.1 ID=prot_H-elongata_contig144727.3074.1|Name=mRNA_H-elongata_contig144727.3074.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
PQEPDYEEGKIVHVTEIPESGVSRESLRGALKPYGNVLYVDFSFGDREAW
IR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014886La_RRM
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf