prot_H-elongata_contig144471.3052.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig144471.3052.1
Unique Nameprot_H-elongata_contig144471.3052.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length121
Homology
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: D8LBH4_ECTSI (COP9 signalosome complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH4_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 3.870e-64
Identity = 103/120 (85.83%), Postives = 111/120 (92.50%), Query Frame = 0
Query:    1 ISVEHVAKATPTDNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAYGNRRAL 120
            ISVEHVAKATPTD ISSIDLHAGAVSTSLRTLLARIEILRR L+ETK GN++VDYPLLRQISSICNQLPTMDG  FSEEFMREFNDSLSV YLA VQKSAGS+NDLAD+FM A+G+RR +
Sbjct:  199 ISVEHVAKATPTDGISSIDLHAGAVSTSLRTLLARIEILRRFLEETKKGNISVDYPLLRQISSICNQLPTMDGAQFSEEFMREFNDSLSVAYLASVQKSAGSMNDLADKFMTAFGHRRPI 318          
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A7S2B7N9_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B7N9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 9.640e-30
Identity = 58/118 (49.15%), Postives = 76/118 (64.41%), Query Frame = 0
Query:    1 ISVEHVAKATPTDNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAYGNRR 118
            I++E +AKATPTD ++S+DLH  ++  SLRTL  R + L   L+ TK G V  DY LLRQ+SSICNQLP +D      +F+ E+ND L V YLA V KS+ SL DL D+      + R
Sbjct:  190 ITMERIAKATPTDGVASLDLHINSLGASLRTLNLRFDALLAFLKATKAGEVPTDYRLLRQVSSICNQLPAVDTAELKGDFITEYNDMLMVNYLASVTKSSASLGDLIDKHSAVVSHHR 307          
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A7S2BCI8_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCI8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.120e-24
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 0
Query:    7 AKATPTDNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAYGNR 117
            AK    +  +++DLH   VS+SL+TL +R   L + L+ TK+G V  DY LLRQ++S+CNQLP +D +  S EF+ ++ND+L V YLA + K    LNDLA++F M    R
Sbjct:  202 AKEKAHEGEATLDLHMNTVSSSLKTLSSRASALVQYLEATKNGTVPTDYRLLRQVASVCNQLPAVDTDELSGEFVGDYNDTLMVNYLASITKGTNELNDLAEKFNMISTQR 312          
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: F0Y0C1_AURAN (Trehalase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0C1_AURAN)

HSP 1 Score: 103 bits (258), Expect = 2.010e-23
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 0
Query:    1 ISVEHVAKATPTDNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMM 112
            IS+E VAK  PTD  S++D H  AV TSLRTL +R+ +L   L+    G    D+ LLRQ+S +C+ LPT      + + MR++ND+L V+YLA V K+A ++NDL+++FM+
Sbjct: 1000 ISMEIVAKTAPTDGESALDTHVEAVDTSLRTLGSRVAVLVDYLRAVAGGKAEPDFALLRQVSGLCDTLPTGGAPDQTRDLMRDYNDALMVSYLASVTKNANAVNDLSEKFML 1111          
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A2P6NGP8_9EUKA (Phosphodiesterase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NGP8_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 5.070e-23
Identity = 47/120 (39.17%), Postives = 72/120 (60.00%), Query Frame = 0
Query:    1 ISVEHVAKATPT--DNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAYGNRR 118
            ISV+H+A+ TP+   N S I  H   +  S+  L  R+ IL+  L+  K G +A D  LLRQ+ S+CNQLP +  +    +F+ EFNDSL +TYLA + K    +N++ D+F + Y  ++
Sbjct:  181 ISVDHIARITPSGDSNTSQISTHLTGIHNSIGMLATRLRILKSFLEAVKSGKIAADPGLLRQLGSLCNQLPALHSDELKNDFIVEFNDSLLITYLASITKGTNGMNEMIDKFNVVYEKQK 300          
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A7S2S2E8_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2E8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.660e-22
Identity = 50/120 (41.67%), Postives = 80/120 (66.67%), Query Frame = 0
Query:    1 ISVEHVAKATPTDNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAYGNRRAL 120
            I++E V+KA+ T  +SS+DLH   +S+SLR+L +R +IL   L+   D  V VD+ LLR+I+S+CNQLP  D +     F+ +FND+L + +LA + KS+ S+++L+ +F  A+    AL
Sbjct:  218 ITMEAVSKASTTAGVSSMDLHVQELSSSLRSLASRTQILVSYLKAIADQQVPVDHKLLREIASVCNQLPAADAQELQGAFLSDFNDTLLINHLALITKSSNSVSELSTKFS-AFSTTSAL 336          
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A1Y1HNE5_KLENI (COP9 signalosome complex subunit 6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNE5_KLENI)

HSP 1 Score: 97.1 bits (240), Expect = 7.020e-22
Identity = 47/117 (40.17%), Postives = 75/117 (64.10%), Query Frame = 0
Query:    1 ISVEHVAKATPTDNISS---IDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAY 114
            ISV+HVA+ TP+   S    +  H   + ++++ L  RI++L  LL     G + +D+ LLRQ+SS+  +LP +D  HF EEF+ E+ND+L +TYLA + K   +LN+L ++F +AY
Sbjct:  170 ISVDHVARITPSGGSSGATQLAAHLMGLHSAIKMLSRRIKVLHHLLLSFSRGELPLDHSLLRQVSSLVRRLPAIDSAHFREEFLTEYNDTLLMTYLAGITKGTSTLNELVEKFNIAY 286          
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: M4B700_HYAAE (COP9 signalosome complex subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B700_HYAAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.550e-21
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 0
Query:    1 ISVEHVAKATPTDNISSIDLHA--GAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRF 110
            I+++H++K TP  + S   LH   G V  +++ L  +I++L   LQ  K G   +D+ LLR ISSICNQLP M  EHF   F  EFND+L V+YLA + K   ++N + DRF
Sbjct:  182 IAIDHISKITPIGDASKSSLHPYLGNVRDAVKMLDRQIDVLLCFLQAIKSGEAPMDHNLLRHISSICNQLPAMQSEHFDAAFTLEFNDALLVSYLATLTKGTTNVNTVVDRF 293          
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A061R7N5_9CHLO (COP9 signalosome complex subunit 6 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R7N5_9CHLO)

HSP 1 Score: 94.4 bits (233), Expect = 8.050e-21
Identity = 45/123 (36.59%), Postives = 76/123 (61.79%), Query Frame = 0
Query:    1 ISVEHVAKATPT---DNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAY--GNRR 118
            I+V+ V K  P+   D  + +  H G++  +L+ L++R+ +L  +L++ K G    D+ ++RQ+ S+   LP ++G+ F E+F+ ++NDSL V YLA + K    LNDL DRF +A+  G RR
Sbjct:  178 IAVDQVTKLVPSGGADGSAQVSAHLGSLHAALKMLVSRLRLLLSVLRKMKGGEAVYDHAIVRQVVSLSRSLPAIEGKEFQEQFLTDYNDSLLVIYLASITKGTAVLNDLIDRFNLAFEKGTRR 300          
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Match: A0A139AQ14_GONPJ (COP9 signalosome complex subunit 6 n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AQ14_GONPJ)

HSP 1 Score: 94.0 bits (232), Expect = 1.520e-20
Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = 0
Query:    1 ISVEHVAKATPTDNISSIDLHAGAVS--TSLRTLLARIEILRRLLQETKDGNVAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSAGSLNDLADRFMMAYGNR 117
            I+V+HVAKA   +      L A  +S   +++ L  RI +L + +Q+ ++G +  D+ LLRQISS+CN+LPT+DG+ F +EF+ + ND L + YLA + K A  +N L +RF +A   R
Sbjct:  178 IAVDHVAKAVAAEASEGSGLIAHLISQRNAIKMLQTRIRLLYQYVQDVQNGTLPRDHNLLRQISSLCNRLPTVDGQEFRKEFLTDQNDVLLIAYLAALTKGAADVNSLVERFNVAGSER 296          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144471.3052.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBH4_ECTSI3.870e-6485.83COP9 signalosome complex subunit 6 n=1 Tax=Ectocar... [more]
A0A7S2B7N9_9STRA9.640e-3049.15COP9 signalosome complex subunit 6 n=1 Tax=Dictyoc... [more]
A0A7S2BCI8_9STRA3.120e-2445.05COP9 signalosome complex subunit 6 n=1 Tax=Florenc... [more]
F0Y0C1_AURAN2.010e-2345.54Trehalase n=1 Tax=Aureococcus anophagefferens TaxI... [more]
A0A2P6NGP8_9EUKA5.070e-2339.17Phosphodiesterase n=1 Tax=Planoprotostelium fungiv... [more]
A0A7S2S2E8_9STRA1.660e-2241.67COP9 signalosome complex subunit 6 n=1 Tax=Rhizoch... [more]
A0A1Y1HNE5_KLENI7.020e-2240.17COP9 signalosome complex subunit 6 n=1 Tax=Klebsor... [more]
M4B700_HYAAE1.550e-2143.75COP9 signalosome complex subunit 6 n=1 Tax=Hyalope... [more]
A0A061R7N5_9CHLO8.050e-2136.59COP9 signalosome complex subunit 6 n=1 Tax=Tetrase... [more]
A0A139AQ14_GONPJ1.520e-2040.34COP9 signalosome complex subunit 6 n=1 Tax=Gonapod... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024969Rpn11/EIF3F, C-terminalPFAMPF13012MitMem_regcoord: 1..107
e-value: 3.5E-17
score: 62.8
NoneNo IPR availablePANTHERPTHR10540EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATEDcoord: 1..116
NoneNo IPR availablePANTHERPTHR10540:SF8COP9 SIGNALOSOME COMPLEX SUBUNIT 6coord: 1..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144471contigH-elongata_contig144471:533..1655 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144471.3052.1mRNA_H-elongata_contig144471.3052.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig144471 533..1655 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig144471.3052.1 ID=prot_H-elongata_contig144471.3052.1|Name=mRNA_H-elongata_contig144471.3052.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
ISVEHVAKATPTDNISSIDLHAGAVSTSLRTLLARIEILRRLLQETKDGN
VAVDYPLLRQISSICNQLPTMDGEHFSEEFMREFNDSLSVTYLACVQKSA
GSLNDLADRFMMAYGNRRAL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024969Rpn11/EIF3F_C