prot_H-elongata_contig14430.3041.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14430.3041.1
Unique Nameprot_H-elongata_contig14430.3041.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length266
Homology
[Close]
BLAST of mRNA_H-elongata_contig14430.3041.1 vs. uniprot
Match: A0A6H5KC60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC60_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.280e-9
Identity = 57/193 (29.53%), Postives = 81/193 (41.97%), Query Frame = 0 
Query:   76 TRYHCTHCGLKHESFCQLLNHVSDDSTLAELTKRLCLEC------NKPSSDELGDERQIKRKKRGTPVLIAPQTPGGVMAMSRG-VNTKIHDG-----ALLV-----RGSNLHDDTSPLDVT----------RRPKLAIVAIEAESRMLKISPEDNCALNRVINKILLSLHPQGTVAFGLPRPWYLHTARICG 241
            T Y CT C + H   C     V+++       +R C++C      N+ + +     R + + K                  SRG V   +  G     A+L+       + LHD T PLD T            PKL IV+I AE R+LK S   N  L RVI+ +   +HP GT+A  +P PW  H  R+ G
Sbjct:  282 TSYICTECSITHMGACANATFVTEEIA----KERRCIKCPRSLDGNEGAGEAEDKARDVGKGKXXXXXXXXXXXXXXXXEASRGRVRPSLLGGPSGNEAVLMDKCRDENATLHD-TVPLDPTGSDVDKLSFRNAPKLVIVSIGAEQRLLKTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRLQG 469
[Close]
BLAST of mRNA_H-elongata_contig14430.3041.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.100e-7
Identity = 35/93 (37.63%), Postives = 47/93 (50.54%), Query Frame = 0 
Query:  147 VMAMSRGVNTKIHDGALLVRGSNLHDDTSPLDVTRRPKLAIVAIEAESRMLKISPEDNCALNRVINKILLSLHPQGTVAFGLPRPWYLHTARI 239
            +M   R  NT +HD   +V       D   L     PKL IV+I AE R+L+ S   N  L RVI+ +   +HP GT+A  +P PW  H  R+
Sbjct:  320 LMDKCRDENTTLHD---IVPLDPTGSDVDKLSFRNAPKLVIVSIGAEQRLLRTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRL 409
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14430.3041.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC60_9PHAE5.280e-929.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBJ9_9PHAE3.100e-737.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14430contigH-elongata_contig14430:430..2824 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14430.3041.1mRNA_H-elongata_contig14430.3041.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14430 414..2824 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14430.3041.1 ID=prot_H-elongata_contig14430.3041.1|Name=mRNA_H-elongata_contig14430.3041.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
MRMSECIKNWTKSLESAKAVIARKTLAGCGKKRRPDKDMEREEDSNEEGD
NRDSGRPTAGSREGNLCTRCKPDEKTRYHCTHCGLKHESFCQLLNHVSDD
STLAELTKRLCLECNKPSSDELGDERQIKRKKRGTPVLIAPQTPGGVMAM
SRGVNTKIHDGALLVRGSNLHDDTSPLDVTRRPKLAIVAIEAESRMLKIS
PEDNCALNRVINKILLSLHPQGTVAFGLPRPWYLHTARICGGRRRESTSL
HGRNAAEAIMIAHKVP
back to top