prot_H-elongata_contig14429.3039.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14429.3039.1
Unique Nameprot_H-elongata_contig14429.3039.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length322
Homology
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: D7FK87_ECTSI (Similar to Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK87_ECTSI)

HSP 1 Score: 288 bits (737), Expect = 2.070e-93
Identity = 166/281 (59.07%), Postives = 200/281 (71.17%), Query Frame = 0
Query:   63 SLISVDVISPREVALDLAPLVPCARSSYTVKWFLKDDPIIFDQATAALQSRVELTNLSPASSYVALVRRT----------ESREASAARVEFSTPEAEGNVTGEMMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPR-------TVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPD----GVASWEDLAMRVVAGGACTASIV-GRVR 321
            S  +  V+S RE  ++L PL       Y+VKWF +D+P IFDQATA+LQSR+ L++LSP + YVA+VRRT          E+ + +A  + FSTPEAEGN +GEMMELSRLEIRVGRC+E +KHP+ADSLYVE VDFGEGEPR       T+VS LV Y+   EMR R+VVGLCNLP R MRGV SSGMLLCASN+DH+ VDPLSPP+ A +GELITF  V+SAPAP  S A+RAWSA MEGM T        GVA W+   M + + GACT+SI  GRVR
Sbjct:   15 SSAAASVVSAREAVVELPPLGGDGVG-YSVKWFEEDNPAIFDQATASLQSRLVLSDLSPGTEYVAVVRRTATAAAAAPAGEAGDNAARELRFSTPEAEGNASGEMMELSRLEIRVGRCLECSKHPDADSLYVETVDFGEGEPRCLGPVDKTIVSRLVAYVPENEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITFESVLSAPAPPSSGASRAWSATMEGMKTAEATADGVGVAGWDGRPM-LTSAGACTSSIAAGRVR 293          
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A6H5KCD4_9PHAE (tRNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD4_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 7.160e-69
Identity = 116/170 (68.24%), Postives = 134/170 (78.82%), Query Frame = 0
Query:  157 MMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPD----GVASWEDLAMRVVAGGACTASIV-GRVR 321
            MMELSRLEIRVGRC+E +KHP+ADSLYVE +DFGEGEPRT+VSGLV Y+  +EMR R+VVGLCNLP R MRGV SSGMLLCASN+DH+ VDPLSPP+ A +GELITF GV+SAPAP  S A+RAWSA  EGM T        GVA W+   M + + GACT+SI  GRVR
Sbjct:    1 MMELSRLEIRVGRCLECSKHPDADSLYVETIDFGEGEPRTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITFEGVLSAPAPPSSGASRAWSATREGMKTAEATADGVGVAGWDGRPM-LTSAGACTSSIAAGRVR 169          
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A7S0FZY8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0FZY8_9RHOD)

HSP 1 Score: 172 bits (437), Expect = 2.470e-48
Identity = 115/259 (44.40%), Postives = 150/259 (57.92%), Query Frame = 0
Query:   63 SLISVDVISPREVALDLAPLVPCARSS--YTVKWFLKDDPIIFDQATAALQSRVELTNLSPASSYVALVRRTESRE----ASAARVEFSTPEAEGNVTGE------MMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWEDLAMRVVAG 309
            ++ S D IS + + L    L   A  S  Y V +    +P  F   T   +S V L  LSP SSY   +   +S++    AS   +   TPE+ G  + +      + ELSRLEIR G  V+  KHP AD+LYVE +D GE EPRT+VSGLV ++S EE+  R VV LCNL PRTMRG+ S GMLLCASN DH+ VDPLSPP+E   GELITF G  SAP   G+ A +A+    + + T   DG+A ++D A +   G
Sbjct:   23 TMCSADNISFQNIGLGSVLLSWPASGSRAYRVAYKSDSNPASFRTVT---RSSVILKGLSPGSSYDMSISELDSKKLLSRASFTTMSAETPESAGAESEKQAEDLPLTELSRLEIRAGTVVQCKKHPEADTLYVETIDVGEQEPRTIVSGLVKFLSEEELTGRRVVVLCNLKPRTMRGIISQGMLLCASNADHSEVDPLSPPEECGNGELITFDGHKSAPIDPGNRATKAFDRVADDLSTN-EDGIAQYQDAAFKTPFG 277          
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 166 bits (420), Expect = 6.180e-46
Identity = 91/165 (55.15%), Postives = 115/165 (69.70%), Query Frame = 0
Query:  157 MMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWEDLAMRVVAGGACTA-SIVGRV 320
            + ELSRLEIRVG+ +E  KHP+AD+LYVEKVD GE EPRT+VSGLV YI +E+M  R VV LCNL PR MRGV S GMLLCASNEDHT VDPL  P++  +GEL+TF G  SAP    + A +A+    +G+ T    GVA +ED+     AG   +A +++G +
Sbjct:  115 LTELSRLEIRVGKIIECEKHPDADTLYVEKVDVGEEEPRTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTFEGHKSAPIDPSNRATKAFDRVADGLSTNEA-GVAMFEDVPFSTSAGPCFSAENVIGSI 278          
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 163 bits (412), Expect = 2.550e-45
Identity = 85/153 (55.56%), Postives = 109/153 (71.24%), Query Frame = 0
Query:  157 MMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWEDLAMRVVAG 309
            + ELSRLEIRVG+ VE  +HP+AD+LYVEKVD GE EPRT+VSGLV ++S EE+  R V+ LCNL PR MRG++S GMLLCASNEDHT+VDPL+ P +A +G LITF G  +AP  +G+ A++A+        T A DG+A +        AG
Sbjct:   68 LTELSRLEIRVGKVVECERHPDADTLYVEKVDVGEDEPRTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDA-DGIARFNATPFMTEAG 219          
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A7S1TKX4_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TKX4_9RHOD)

HSP 1 Score: 157 bits (396), Expect = 8.980e-42
Identity = 89/161 (55.28%), Postives = 108/161 (67.08%), Query Frame = 0
Query:  147 PEAEGNVTG----EMMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWEDLA 303
            P  EG V       + E SRLEIRVGR +E  KHP+AD+LYVEKVD GE E RT+VSGLV Y+ ++EM  R VV LCNL PR MRGV S GMLLCASNEDHT VDPL+ P++  +G LIT  G  SAP  +G+ A++A+   +     T  DG+A  ED A
Sbjct:  156 PAGEGGVDSGNDAPVTEFSRLEIRVGRILECEKHPDADTLYVEKVDVGEPETRTIVSGLVKYVPLDEMIGRTVVVLCNLKPRAMRGVTSFGMLLCASNEDHTEVDPLTAPEDTPIGTLITAPGHRSAPVEAGNRASKAFDR-VAAQFRTDGDGIAYVEDAA 315          
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP)

HSP 1 Score: 153 bits (387), Expect = 2.680e-41
Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 0
Query:  157 MMELSRLEIRVGRCVEINKHPNADSLYVEKVDFG-EGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWEDLAMRVVAG 309
            + ELSRLEIRVG+ ++  KHP ADSLYVE+VD G E   R +VSGLV ++ +EEM DR V+ LCNL PR MRG+ S GMLLCASNEDH++VDPL+ P+   +G L+TF G  S PAP+G+ A++A+    + + T A  GVA +E +     +G
Sbjct:   92 LTELSRLEIRVGKIIKCEKHPEADSLYVEEVDVGDESGARVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQVDPLTAPEGVPIGALVTFEGHRSEPAPAGNRASKAFDKVAKSLRTDAT-GVAMFEQVPFATPSG 244          
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: D7FMW6_ECTSI (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW6_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 2.760e-41
Identity = 75/131 (57.25%), Postives = 100/131 (76.34%), Query Frame = 0
Query:  154 TGEMMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGE---PRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAW 281
            TGE+ EL+RLEIR+G+ VEI +HP+ADSLYVEKVD G+GE   PRT+VSGLV +    ++  R VV LCNL P  M+GV S+GMLLC+SNEDH++V+PL PP+   +GEL+TF G + +P  +G+ A +AW
Sbjct:   86 TGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPRTIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSKVEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAW 216          
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A7S2V4I0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I0_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.070e-40
Identity = 73/116 (62.93%), Postives = 90/116 (77.59%), Query Frame = 0
Query:  155 GEMMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAP 270
            GE+ E SRLEIRVG+ V+++ HP+AD LYVEK+D GE EPRT+VSGLV Y+  E++ DR VV L NL PR MRG+ S GMLLCASNEDH++V PLSPP+ +  GELIT  G +S P
Sbjct:   81 GELNEFSRLEIRVGKIVDVSVHPDADGLYVEKIDCGEDEPRTIVSGLVKYLKAEDLLDRSVVVLANLKPRAMRGITSHGMLLCASNEDHSQVVPLSPPESSVPGELITVEGTLSQP 196          
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Match: A0A835YNH3_9STRA (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH3_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.890e-40
Identity = 80/151 (52.98%), Postives = 107/151 (70.86%), Query Frame = 0
Query:  155 GEMMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGE-GEPRTVVSGLVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLSPPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWEDLAM 304
            G++ EL+RLE+RVGR VEI +HP+AD LYVEK+D GE   PRT+VSGLV Y S  ++ +R VV L NL P  MRGVES+GM+LC+SN DHT+V PL PP+   +GEL+TF G ++AP  +G+ A +AW    +  +    DGVA + D A+
Sbjct:   75 GQLTELARLEMRVGRIVEIGRHPDADGLYVEKIDIGEPAGPRTIVSGLVAYCSEADLLNRDVVILANLKPVNMRGVESAGMVLCSSNADHTQVAPLVPPEGTPLGELVTFEGHLAAPVEAGNRAVKAWKKVAK-TVAVGEDGVARFTDEAL 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14429.3039.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK87_ECTSI2.070e-9359.07Similar to Tyrosyl-tRNA synthetase, cytoplasmic (T... [more]
A0A6H5KCD4_9PHAE7.160e-6968.24tRNA-binding domain-containing protein n=1 Tax=Ect... [more]
A0A7S0FZY8_9RHOD2.470e-4844.40Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2V3IUX7_9FLOR6.180e-4655.15Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]
A0A7S0ZE83_9RHOD2.550e-4555.56Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A7S1TKX4_9RHOD8.980e-4255.28Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
A0A5J4Z2W6_PORPP2.680e-4152.60Putative methionine--tRNA ligase n=1 Tax=Porphyrid... [more]
D7FMW6_ECTSI2.760e-4157.25Endothelial monocyte-activating polypeptide II pro... [more]
A0A7S2V4I0_9STRA1.070e-4062.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YNH3_9STRA2.890e-4052.98Endothelial monocyte-activating polypeptide II pro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 158..321
e-value: 1.8E-49
score: 169.7
NoneNo IPR availablePANTHERPTHR11586FAMILY NOT NAMEDcoord: 114..317
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..321
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.732
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 165..259
e-value: 5.6E-29
score: 100.1
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 159..262
score: 30.601
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 160..281

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14429contigH-elongata_contig14429:2772..5483 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14429.3039.1mRNA_H-elongata_contig14429.3039.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14429 2686..5836 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14429.3039.1 ID=prot_H-elongata_contig14429.3039.1|Name=mRNA_H-elongata_contig14429.3039.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=322bp
MSASRILLLVAFCSLKISAGFVVIRDSLISISSSTARGSRAHGAARAASS
PSVTVADAPVMPSLISVDVISPREVALDLAPLVPCARSSYTVKWFLKDDP
IIFDQATAALQSRVELTNLSPASSYVALVRRTESREASAARVEFSTPEAE
GNVTGEMMELSRLEIRVGRCVEINKHPNADSLYVEKVDFGEGEPRTVVSG
LVGYISVEEMRDRLVVGLCNLPPRTMRGVESSGMLLCASNEDHTRVDPLS
PPKEANVGELITFAGVMSAPAPSGSAAARAWSAAMEGMMTTAPDGVASWE
DLAMRVVAGGACTASIVGRVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR012340NA-bd_OB-fold