prot_H-elongata_contig143941.3019.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig143941.3019.1
Unique Nameprot_H-elongata_contig143941.3019.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length74
Homology
BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.530e-41
Identity = 64/74 (86.49%), Postives = 71/74 (95.95%), Query Frame = 0
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 74
            MN IQ +KRINERELEQG+SGKASWH+EY DSAW++AGGFPYDLTEGD+LCVMSQWGEIEDINLCR+KDTGKSK
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSK 74          
BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 122 bits (307), Expect = 7.530e-34
Identity = 50/74 (67.57%), Postives = 66/74 (89.19%), Query Frame = 0
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 74
            MN ++ +++INEREL++GL+G ASWH++Y DSAW++ GG  Y+LTEGDV+CV+SQWGEIEDINL RD+DTGKSK
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSK 74          
BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: A0A7S3YEY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY6_HETAK)

HSP 1 Score: 116 bits (291), Expect = 1.830e-30
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 0
Query:    1 MNSIQGVKRINERELEQGLSGK-ASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 74
            MN IQ +KRIN+RELE GL+G  ASWH +Y +SAW+Y G  PY LTEGD+LC MSQWGEIEDIN  RDKDTGK K
Sbjct:    1 MNVIQEIKRINDRELEAGLTGTDASWHSKYKNSAWVYVGSIPYALTEGDILCFMSQWGEIEDINYVRDKDTGKPK 75          
BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.800e-30
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 0
Query:    1 MNSIQGVKRINERELEQGLSGKA-SWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 74
            MN IQ +KRINE EL +G++G A SWH +Y DSA+++ GG PYDL EGDVLCV SQWGE+EDINL RD+ TGKSK
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKSK 76          
BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: W4H400_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4H400_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.130e-30
Identity = 51/73 (69.86%), Postives = 61/73 (83.56%), Query Frame = 0
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKS 73
            MN I+ ++R+NE+ELEQG+S + SWH+ Y DSAW+Y GG  YDLTEGD+LCV SQ GEIEDINL RDKDTGKS
Sbjct:    1 MNVIKEIQRLNEQELEQGVSIEGSWHHIYRDSAWVYVGGLSYDLTEGDILCVFSQVGEIEDINLVRDKDTGKS 73          
BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: A0A0B7B659_9EUPU (RRM domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7B659_9EUPU)

HSP 1 Score: 107 bits (268), Expect = 4.970e-29
Identity = 42/74 (56.76%), Postives = 60/74 (81.08%), Query Frame = 0
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 74
            + +++ ++++N+RELE G+ GK SWH EY DSAW++ GG PYDLTEGD++CV SQ+GE+ ++NL RD  TGKSK
Sbjct:    4 LTNVKNIQKLNDRELELGIIGKKSWHDEYKDSAWVFIGGLPYDLTEGDIICVFSQYGEVVNLNLIRDHKTGKSK 77          
BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: A0A1V9ZVW6_9STRA (U2 snRNP component IST3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVW6_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.480e-29
Identity = 46/73 (63.01%), Postives = 60/73 (82.19%), Query Frame = 0
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKS 73
            MN ++ ++R+N++EL+QG+  + SWHY Y DSAWIY G   Y+L+EGDVLCV SQ+GEIEDINL RDK+TGKS
Sbjct:    1 MNVVKEIERLNQQELDQGIGYEGSWHYIYRDSAWIYVGSLSYELSEGDVLCVFSQFGEIEDINLVRDKETGKS 73          
BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: UPI000719AA0E (RNA-binding motif protein, X-linked 2-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719AA0E)

HSP 1 Score: 108 bits (269), Expect = 8.790e-29
Identity = 43/74 (58.11%), Postives = 60/74 (81.08%), Query Frame = 0
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 74
            + +++ + ++NE E++ G+SGK SWH +Y DSAWI+ GG PYDLTEGD++CV SQ+GEI +INL RDK TGK+K
Sbjct:    4 LTNVRNINKLNETEIKLGISGKNSWHNQYKDSAWIFIGGLPYDLTEGDIICVFSQYGEIANINLVRDKKTGKTK 77          
BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: A0A1Y1WJ56_9FUNG (RRM domain-containing protein (Fragment) n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WJ56_9FUNG)

HSP 1 Score: 107 bits (268), Expect = 1.440e-28
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 74
            MN +Q +KR+NE E   GL   ASWH +Y DSA+I+ GG P+DLTEGDV+CV SQ+GEI +INL RDK+TGKSK
Sbjct:    3 MNVVQNIKRLNEAEARTGLDQTASWHEQYKDSAYIFVGGLPFDLTEGDVICVFSQYGEIVNINLVRDKETGKSK 76          
BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Match: V4BGA1_LOTGI (RRM domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BGA1_LOTGI)

HSP 1 Score: 108 bits (271), Expect = 1.620e-28
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 0
Query:    1 MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSK 74
            + +++ + +IN+RELE G+ GK SWH EY DSAWI+ GG PYDLTEGDV+CV SQ+GE+ +IN+ RDK TGK+K
Sbjct:    4 LTNVKNLNKINQRELELGVIGKKSWHDEYKDSAWIFIGGLPYDLTEGDVICVFSQYGELVNINMVRDKQTGKTK 77          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143941.3019.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPK4_ECTSI2.530e-4186.49RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YJH4_9STRA7.530e-3467.57RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3YEY6_HETAK1.830e-3070.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RL84_9STRA3.800e-3068.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
W4H400_9STRA5.130e-3069.86RRM domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A0B7B659_9EUPU4.970e-2956.76RRM domain-containing protein n=1 Tax=Arion vulgar... [more]
A0A1V9ZVW6_9STRA8.480e-2963.01U2 snRNP component IST3 n=1 Tax=Thraustotheca clav... [more]
UPI000719AA0E8.790e-2958.11RNA-binding motif protein, X-linked 2-like n=1 Tax... [more]
A0A1Y1WJ56_9FUNG1.440e-2863.51RRM domain-containing protein (Fragment) n=1 Tax=L... [more]
V4BGA1_LOTGI1.620e-2860.81RRM domain-containing protein n=1 Tax=Lottia gigan... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 35..74
e-value: 2.5E-5
score: 24.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..74
e-value: 4.1E-9
score: 38.5
NoneNo IPR availablePANTHERPTHR45880FAMILY NOT NAMEDcoord: 1..74
NoneNo IPR availablePANTHERPTHR45880:SF1RNA-BINDING MOTIF PROTEIN, X-LINKED 2coord: 1..74
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 7..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143941contigH-elongata_contig143941:776..997 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143941.3019.1mRNA_H-elongata_contig143941.3019.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig143941 776..997 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig143941.3019.1 ID=prot_H-elongata_contig143941.3019.1|Name=mRNA_H-elongata_contig143941.3019.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MNSIQGVKRINERELEQGLSGKASWHYEYNDSAWIYAGGFPYDLTEGDVL
CVMSQWGEIEDINLCRDKDTGKSK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf