prot_H-elongata_contig14380.3012.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14380.3012.1
Unique Nameprot_H-elongata_contig14380.3012.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length70
Homology
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BLAST of mRNA_H-elongata_contig14380.3012.1 vs. uniprot
Match: D8LH78_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH78_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.600e-19
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:    1 MSGGDSSFEGLLAGIISNNNEERRRAETAYNEVLDTQPAVVVANLLRCLENGQAELLRTTCAVLLRRVVV 70
            MS GD++FE +LAG++S +N  R+ AE  YN+ L+TQPAV+   LLRCL + QAEL+RTTCAVL+RRVVV
Sbjct:    1 MSSGDANFEAVLAGLLSQDNAVRKNAEAVYNKELETQPAVIAGQLLRCLASAQAELIRTTCAVLIRRVVV 70
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BLAST of mRNA_H-elongata_contig14380.3012.1 vs. uniprot
Match: A0A2V0P880_9CHLO (Importin N-terminal domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P880_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 2.420e-5
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 0 
Query:    8 FEGLLAGIISNNNEERRRAETAYNEVLDTQPAVVVANLLRCLENGQAELLRTTCAVLLRRV 68
            FEGL+A ++S++NE RR AE  + EV    P   V +LLRCL    +E  R   A++LR+V
Sbjct:   15 FEGLVATLLSSDNESRRHAEAVFEEV-KKHPDACVQHLLRCLRQSASEENRAFSAIMLRKV 74
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BLAST of mRNA_H-elongata_contig14380.3012.1 vs. uniprot
Match: A0A836B4K9_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B4K9_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 3.300e-5
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 0 
Query:    7 SFEGLLAGIISNNNEERRRAETAYNEVLDTQPAVVVANLLRCLENGQAELLRTTCAVLLRRVVV 70
            SF GL+   +S +N  R+ AE  Y+ +   +P     NLL+ L      L+R+TCAV LR+VVV
Sbjct:   15 SFAGLIGQTLSTDNATRKSAEDLYSSLRRQRPDACATNLLQLLRTSSEVLVRSTCAVFLRKVVV 78
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BLAST of mRNA_H-elongata_contig14380.3012.1 vs. uniprot
Match: A8JAH8_CHLRE (Predicted protein (Fragment) n=2 Tax=Chlamydomonas TaxID=3052 RepID=A8JAH8_CHLRE)

HSP 1 Score: 49.3 bits (116), Expect = 4.520e-5
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 0 
Query:    7 SFEGLLAGIISNNNEERRRAETAYNEVLDTQPAVVVANLLRCLENGQAELLRTTCAVLLRRVV 69
            SF GL+   +S +N +R+ AE  Y+ +   +P     NLL+ L      L+R+TCAV LR+VV
Sbjct:   15 SFAGLIGQTLSTDNAQRKSAEDLYSSLRKQRPDACATNLLQLLRTSPEVLVRSTCAVFLRKVV 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14380.3012.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LH78_ECTSI2.600e-1961.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2V0P880_9CHLO2.420e-544.26Importin N-terminal domain-containing protein n=1 ... [more]
A0A836B4K9_9CHLO3.300e-540.63Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A8JAH8_CHLRE4.520e-539.68Predicted protein (Fragment) n=2 Tax=Chlamydomonas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 5..70
e-value: 7.8E-7
score: 29.5
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 7..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14380contigH-elongata_contig14380:5242..5665 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14380.3012.1mRNA_H-elongata_contig14380.3012.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14380 5242..5791 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14380.3012.1 ID=prot_H-elongata_contig14380.3012.1|Name=mRNA_H-elongata_contig14380.3012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MSGGDSSFEGLLAGIISNNNEERRRAETAYNEVLDTQPAVVVANLLRCLE
NGQAELLRTTCAVLLRRVVV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold