prot_H-elongata_contig143701.3009.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig143701.3009.1
Unique Name	prot_H-elongata_contig143701.3009.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	141

Homology

[Close]

BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.260e-23
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 0

Query:    4 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 139
            + ++R+D GG++ G  F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  156 VEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFSKPAYCRWQRPS-KLLPKGESCFYVG 297

[Close]

BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.470e-22
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 0

Query:    4 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 139
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  788 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCFYVG 929

[Close]

BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.480e-22
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 0

Query:    4 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 139
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  495 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCFYVG 636

[Close]

BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.680e-22
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 0

Query:    4 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 139
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  376 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 517

[Close]

BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.960e-22
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 0

Query:    4 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 139
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:   42 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 183

[Close]

BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.000e-22
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 0

Query:    4 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 139
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  309 VEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 450

[Close]

BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.370e-22
Identity = 57/144 (39.58%), Postives = 81/144 (56.25%), Query Frame = 0

Query:    4 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGRRPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 139
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+    +A       L   +   K+DRLWAEAM +AC+  N +  S+   S SPYE+W+G        P F    Y +  +P  KL P+G +   +G
Sbjct:   42 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPYP-FLKPAYCRWQRPS-KLLPKGEACFYVG 183

[Close]

BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 9.160e-22
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 0

Query:    4 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 139
            + ++R+D GGE+ G +F S   +L IK+E TP Y+PQYNGV ER LGL+ +  +A       L   +   K+D+LWAEAM +AC+  N +  S+   S  PYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  254 VEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 395

[Close]

BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.390e-21
Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 0

Query:    4 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 139
            I ++R+D GGE+ G +F S   +L IK+E TP ++P++NGV ER LGL+ +  +A       L   +   K+DRLWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  539 IEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVG 680

[Close]

BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.400e-21
Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 0

Query:    4 IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYNGVVERALGLLHDKIVA-------LLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELWYGR-RPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLG 139
            I ++R+D GGE+ G +F S   +L IK+E TP ++P++NGV ER LGL+ +  +A       L   +   K+DRLWAEAM +AC+  N +  S+   S SPYE+WYG  RP      PF    Y +  +P  KL P+G S   +G
Sbjct:  515 IEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVG 656

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot

BLAST of mRNA_H-elongata_contig143701.3009.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KVR5_9PHAE	5.260e-23	40.69	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JBA7_9PHAE	1.470e-22	41.38	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	1.480e-22	41.38	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JV76_9PHAE	1.680e-22	41.38	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KKK1_9PHAE	1.960e-22	41.38	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JRL9_9PHAE	2.000e-22	41.38	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KWE4_9PHAE	5.370e-22	39.58	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L3Y0_9PHAE	9.160e-22	40.69	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K622_9PHAE	2.390e-21	40.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JH25_9PHAE	2.400e-21	40.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..125 e-value: 2.2E-17 score: 64.9
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..104 score: 15.116
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 5..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig143701	contig	H-elongata_contig143701:8..430 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig143701.3009.1	mRNA_H-elongata_contig143701.3009.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig143701 8..430 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig143701.3009.1 ID=prot_H-elongata_contig143701.3009.1|Name=mRNA_H-elongata_contig143701.3009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
GLKIGVIRTDGGGEWHGQFLSFLRKLGIKRESTPPYTPQYNGVVERALGL
LHDKIVALLQGIMEGKSDRLWAEAMTYACDMWNRSTSSSLDSSTSPYELW
YGRRPTFDDIPPFGTVGYLQRSKPEHKLAPRGASYIMLGLV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf