prot_H-elongata_contig14354.2998.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14354.2998.1
Unique Nameprot_H-elongata_contig14354.2998.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length59
Homology
BLAST of mRNA_H-elongata_contig14354.2998.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 8.250e-14
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKG 31
            MATPVNPKPFLNELTGKPVMVKLKWGMEYKG
Sbjct:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKG 31          
BLAST of mRNA_H-elongata_contig14354.2998.1 vs. uniprot
Match: A0A8D2QFR0_ZONAL (Sm protein F n=1 Tax=Zonotrichia albicollis TaxID=44394 RepID=A0A8D2QFR0_ZONAL)

HSP 1 Score: 63.9 bits (154), Expect = 4.490e-12
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGERAELFYFNPFLDVKKRLPNCQG 54
            M+ P+NPKPFLN LTGKPVMVKLKWGMEYKG    +   + +++++ R P   G
Sbjct:    1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSV---DGYMNMQVRAPALWG 51          
BLAST of mRNA_H-elongata_contig14354.2998.1 vs. uniprot
Match: A0A177WM22_BATDL (Sm protein F n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WM22_BATDL)

HSP 1 Score: 63.2 bits (152), Expect = 6.880e-12
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0
Query:    4 PVNPKPFLNELTGKPVMVKLKWGMEYKG 31
            PVNPKPFLNELTGKP+MVKLKWGMEYKG
Sbjct:    5 PVNPKPFLNELTGKPIMVKLKWGMEYKG 32          
BLAST of mRNA_H-elongata_contig14354.2998.1 vs. uniprot
Match: A0A8B9WQI5_BOSMU (Sm domain-containing protein n=1 Tax=Bos mutus grunniens TaxID=30521 RepID=A0A8B9WQI5_BOSMU)

HSP 1 Score: 63.2 bits (152), Expect = 1.020e-11
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGERAELFYFNPFLDVKKRLPNC 52
            M+ P+NPKPFLN LTGKPVMVKLKWGMEYKG    +   + +++++ R  +C
Sbjct:    1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSV---DGYMNMQVRTISC 49          
BLAST of mRNA_H-elongata_contig14354.2998.1 vs. uniprot
Match: A0A1S4C443_TOBAC (Sm protein F n=23 Tax=Magnoliopsida TaxID=3398 RepID=A0A1S4C443_TOBAC)

HSP 1 Score: 62.8 bits (151), Expect = 1.570e-11
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKG 31
            M+ PVNPKP+LN LTGKPVMVKLKWGMEYKG
Sbjct:    1 MSVPVNPKPYLNNLTGKPVMVKLKWGMEYKG 31          
BLAST of mRNA_H-elongata_contig14354.2998.1 vs. uniprot
Match: A0A199VBT5_ANACO (Sm protein F n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VBT5_ANACO)

HSP 1 Score: 61.6 bits (148), Expect = 1.640e-11
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKG 31
            A PVNPKPFLN LTGKPV+VKLKWGMEYKG
Sbjct:    3 AVPVNPKPFLNNLTGKPVIVKLKWGMEYKG 32          
BLAST of mRNA_H-elongata_contig14354.2998.1 vs. uniprot
Match: UPI001BF47C81 (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF47C81)

HSP 1 Score: 62.4 bits (150), Expect = 1.870e-11
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGERAEL 36
            M+ PVNPKPFLN LTGKPV+VKLKWGMEYKG  A +
Sbjct:    1 MSIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASV 36          
BLAST of mRNA_H-elongata_contig14354.2998.1 vs. uniprot
Match: A0A8C3F3M8_CHRPI (Small nuclear ribonucleoprotein polypeptide F n=1 Tax=Chrysemys picta bellii TaxID=8478 RepID=A0A8C3F3M8_CHRPI)

HSP 1 Score: 61.6 bits (148), Expect = 1.910e-11
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKG 31
            M+ P+NPKPFLN LTGKPVMVKLKWGMEYKG
Sbjct:    1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKG 31          
BLAST of mRNA_H-elongata_contig14354.2998.1 vs. uniprot
Match: A0A0D2J3N2_9CHLO (Sm protein F n=2 Tax=Selenastraceae TaxID=35466 RepID=A0A0D2J3N2_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 2.010e-11
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKG 31
            A PVNPKPF+NELTGKP++VKLKWGMEYKG
Sbjct:    4 AAPVNPKPFMNELTGKPIVVKLKWGMEYKG 33          
BLAST of mRNA_H-elongata_contig14354.2998.1 vs. uniprot
Match: A0A6P9F5Z8_JUGRE (Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P9F5Z8_JUGRE)

HSP 1 Score: 62.4 bits (150), Expect = 2.220e-11
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGERAEL 36
            M+ PVNPKPFLN LTGKPV+VKLKWGMEYKG  A +
Sbjct:    1 MSIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASV 36          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14354.2998.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI8.250e-14100.00Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A8D2QFR0_ZONAL4.490e-1255.56Sm protein F n=1 Tax=Zonotrichia albicollis TaxID=... [more]
A0A177WM22_BATDL6.880e-1296.43Sm protein F n=2 Tax=Batrachochytrium dendrobatidi... [more]
A0A8B9WQI5_BOSMU1.020e-1155.77Sm domain-containing protein n=1 Tax=Bos mutus gru... [more]
A0A1S4C443_TOBAC1.570e-1187.10Sm protein F n=23 Tax=Magnoliopsida TaxID=3398 Rep... [more]
A0A199VBT5_ANACO1.640e-1190.00Sm protein F n=1 Tax=Ananas comosus TaxID=4615 Rep... [more]
UPI001BF47C811.870e-1177.78Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
A0A8C3F3M8_CHRPI1.910e-1187.10Small nuclear ribonucleoprotein polypeptide F n=1 ... [more]
A0A0D2J3N2_9CHLO2.010e-1186.67Sm protein F n=2 Tax=Selenastraceae TaxID=35466 Re... [more]
A0A6P9F5Z8_JUGRE2.220e-1177.78Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..49
e-value: 1.4E-8
score: 36.2
NoneNo IPR availablePANTHERPTHR11021:SF2coord: 1..31
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 1..31
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 6..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14354contigH-elongata_contig14354:6284..6460 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14354.2998.1mRNA_H-elongata_contig14354.2998.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14354 6263..6661 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14354.2998.1 ID=prot_H-elongata_contig14354.2998.1|Name=mRNA_H-elongata_contig14354.2998.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MATPVNPKPFLNELTGKPVMVKLKWGMEYKGERAELFYFNPFLDVKKRLP
NCQGKAAD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf