prot_H-elongata_contig14343.2992.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14343.2992.1
Unique Nameprot_H-elongata_contig14343.2992.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length385
Homology
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: A0A6H5JSE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE9_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.060e-40
Identity = 150/405 (37.04%), Postives = 192/405 (47.41%), Query Frame = 0
Query:    1 MEAAVATPDQWETVAFQVGGGRTPTACMRQFLNLAVEEVLGEQNEQGPATGRGATSEAWVSKIGTLPDGDSEGFAENPAQKGADGGAVKSIAPSLSLMRQDTPPQGGKAAAESTHVGVGSTSGKGGTESYSDIGEAVASAGTGFITGADVDVDKDSHRRECRTPLGQNAPALMLASALVSSVHPEVLRAAASAAAVAAEDVARRWDASSKCEITAALVDSGRGGSLLEA---SRIAESSMGPRNEDVIMLEATARE-------------PGVELGQARRDLDATSNGKSKRSSETHAAAPWALKRGIG-----RLDEVERRISRAAAARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELLANQAQSMLSK 384
            MEAAVA P++W+ VA QV GGRTP  CM++FL+LAVE+V+ + NE+ PA                +P                                              +  G  S  GK       D G      G+          ++ + +++    LG   PAL+LASALVSSVHPEVL+AA SAAA AA+ V     A++  +       +G  G    A   + + ES   P  ED  +     ++             P V+      +      G+  R +   A    A +   G      L      +  A AARAAVLSVAGLQARGLAEQE+RRTEAL+ADLLEAR+QRLE KLHC DELDQVLE ER  LEHDRAEL+  QA+SML K
Sbjct:  754 MEAAVANPNRWDAVARQVAGGRTPVECMQRFLSLAVEDVV-QGNEKLPAA---------------VPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSSAGAASGEGK-------DAGTIPDQGGS---------QNRPNQQQQRPDYLGPEVPALVLASALVSSVHPEVLKAAMSAAAEAADAVTAA--ATANHDRDRGFPPAGGSGGGFRAGVPAAVEESGSRPGEEDGDLEMPDVKDLAGPAPRSRPGEPPAVDTAPVAANGGGAGAGEDGRVAVGGAPGSRAARGCAGGSSSASLSSSAGGLELATAARAAVLSVAGLQARGLAEQEERRTEALLADLLEARVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSMLPK 1124          
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: D8LMT7_ECTSI (Phasmid Socket Absent family member (Psa-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT7_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 8.800e-28
Identity = 67/81 (82.72%), Postives = 72/81 (88.89%), Query Frame = 0
Query:  304 AAAARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELLANQAQSMLSK 384
            A AARAAVLSVAGLQARGLAEQE+RRTEAL+ADLLEAR+QRLE KLHC DELDQVLE ER  LEHDRAEL+  QA+SML K
Sbjct:  127 ATAARAAVLSVAGLQARGLAEQEERRTEALLADLLEARVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSMLPK 207          
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: T1H8S7_RHOPR (Uncharacterized protein n=5 Tax=Triatominae TaxID=70999 RepID=T1H8S7_RHOPR)

HSP 1 Score: 58.5 bits (140), Expect = 1.410e-5
Identity = 94/388 (24.23%), Postives = 156/388 (40.21%), Query Frame = 0
Query:    1 MEAAVATPDQWETVAFQVGGGRTPTACMRQFLNLAVEEVLGEQNEQGPATGRGATSEAWVSKIGTLPDGDSEGFAENPAQKGADGGAVKSIAPSLSLMRQDTPPQGGKAAAESTHVGVGSTSGKGGTESYSDIGEAVASAGTGFITGADVDVDKDSHRRECRTPLGQNAPALMLASALVSSVHPEVLRAA-ASAAAVAAEDVARRWDASSKCEITAALVDSGRGGSLLEASRIAESSMGPRNEDVIMLEATAREPGVELGQARRDLDATSNGKSKRSSETHAAAPWALKRGIGRLDEVERRISRAA---AARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELLANQAQSMLSK 384
            +EA     D W  V   VG  RT   C+  FL L +E+   E +E G A G  A      SK G            NP            I  +++ +     P+   +AA++  V             +++I + V +A           +D      E  T  G+  P+  L  + ++   PE   +       V +E      D++ K E  AA   S  GG    ++ +    MGP+  +       A     E  +     DA   GK + + E                D    R+ + A   +A AA L+ A ++A+ LA  E+R+ ++L+A L+E ++++LE KL   +EL+  +E ER+ LE+ R +L+A + Q  L +
Sbjct:  557 LEALELYKDDWNKVCEHVGS-RTQDECILHFLRLPIEDPYLEDHEAGGALGPLAYQPIPFSKAG------------NP------------IMSTVAFLASVVDPRVAASAAKAAMV------------EFANIRDEVPAAL----------LDAHIKHVEASTADGKYDPSAGLVQSGIAGTQPEKEESEDKEKKEVGSEGEGSTGDSAVKTEAAAAAPGSTAGGP--SSTEVKNEDMGPQQSNNTSSTGAAAVTKTEGSEPMETEDA---GKKEEAPE----------------DAERERVVKDAQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEKEREGLEYQRQQLIAERQQFHLEQ 876          
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: A0A8C1ZEB7_CYPCA (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1ZEB7_CYPCA)

HSP 1 Score: 58.2 bits (139), Expect = 1.890e-5
Identity = 73/231 (31.60%), Postives = 112/231 (48.48%), Query Frame = 0
Query:  170 PALMLASALVSSVHPEVLRAAASAAAVAAEDVARRWDASSKCEITAALVD------------SGRGGSL--LEASRIA--ESSMGPRNEDVIMLE-ATAREPGVELGQARRDLDATSNG-----KSKRSSETHAAAPWALKRGIGRLDEVERRISRA--AAARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELLAN 376
            P +   + L S V P V  AAA +A    E+ +R      K E+ AALV+            SGR   L  LE S IA  ES  G   E+    E     E  V  G+A RD + T +      K K   E              +  +VER +     A A A+ L+ A ++A+ LA  E+R+ ++L+A L+E ++++LE KL   +EL+ +++ ER++LE+ R +LLA+
Sbjct:  639 PVMSTVAFLASVVDPRVASAAAKSAL---EEFSRM-----KEEVPAALVEAHVRRVEEAARASGRPDPLYGLEGSGIAGTESKDGASEEEEKQGENGKKEEERVREGEAERDTEKTDSEMADGEKEKXRKEGSEXXXXXXXXXXEKKAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLAD 861          
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: A0A2B4SQ03_STYPI (SWI/SNF complex subunit SMARCC2 n=4 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SQ03_STYPI)

HSP 1 Score: 58.2 bits (139), Expect = 1.910e-5
Identity = 63/215 (29.30%), Postives = 110/215 (51.16%), Query Frame = 0
Query:  167 QNAPALMLASALVSSVHPEVLRAAASAAAVAAEDVARRWDASSKCEITAALVDSG-RGGSLLEASRIAESSMGPRNEDVIM-LEATAREPGVELGQARRDLDATSNGKSKRSSETHAAAPWALKRGIGRLDEVERRISRAAAARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELLANQAQ 379
            Q  P +   + L S V P V  AAA AA     ++        K EI  +++DS  +  +   A ++ + S     E+    +E    +  V  G+  R  DA    K++ SSE  + A    K         E  I++AAA+    L+ A ++A+ LA+ E+R+ ++L+A L+E ++++LE KL   +EL+ +++ ER++LE+ R +LLA + Q
Sbjct:  658 QGNPIMSTVAFLASVVDPRVASAAAKAALEKFSEM--------KDEIPQSVIDSHVKNAANARAEKVKQESSDENKEETPQPMEVNGGQGTVVEGRETRAQDA----KAEESSEPSSQAQNGEKTPAIN----EENIAKAAAS---ALAAAAVKAKHLAQVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLAERQQ 853          
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: UPI001BD29E7F (SWI/SNF complex subunit SMARCC1b n=1 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD29E7F)

HSP 1 Score: 57.4 bits (137), Expect = 3.270e-5
Identity = 62/212 (29.25%), Postives = 108/212 (50.94%), Query Frame = 0
Query:  170 PALMLASALVSSVHPEVLRAAASAAAVAAEDVARRWDASSK--CEITAALVDSGRGGSLLEASRIAESS---MGPRNEDVIMLEAT-AREPGVELGQARRDLDATSNGKSKRSSETHAAAPWALKRGIGRLDEVERRISRAAAARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELLA 375
            P +   + L S V P V   A+SAA  A E+ +R  + S     EIT    +      +++A ++  +S    G    D + LE + A+  GV+   A   L    +G+               +RG+   D VE  +S+AAAA    L+ A  +A+ LA  E+R+ ++L+A L+E ++++LE KL   +EL+ +++ E+++LE  R +LL+
Sbjct:  664 PVMSTVAFLASVVDPRV---ASSAAKAALEEFSRTQEESGVKISEIT----NQPEKSEMMDAEKMETNSTSHQGSLRSDGLKLEPSGAKVEGVKRENAENLLGEERDGRGDDEDSIGRREADGDERGVMEQDLVEANVSKAAAA---ALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLS 865          
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: A0A0R3QGH9_9BILA (SWIRM-assoc_1 domain-containing protein n=1 Tax=Brugia timori TaxID=42155 RepID=A0A0R3QGH9_9BILA)

HSP 1 Score: 53.9 bits (128), Expect = 4.390e-5
Identity = 29/69 (42.03%), Postives = 51/69 (73.91%), Query Frame = 0
Query:  306 AARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELL 374
            AA AA L+ A ++A+ LA  E+RR ++L+A L+E ++++LE KL   DEL+ +++ ER++LE+ R +L+
Sbjct:    1 AAAAAALAAAAVKAKHLAAIEERRIKSLVAQLVETQMKKLEMKLRHFDELEAIMDKEREALEYQRQQLI 69          
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: G5EF87_CAEEL (SANT domain-containing protein n=8 Tax=Caenorhabditis elegans TaxID=6239 RepID=G5EF87_CAEEL)

HSP 1 Score: 56.6 bits (135), Expect = 5.430e-5
Identity = 30/69 (43.48%), Postives = 53/69 (76.81%), Query Frame = 0
Query:  306 AARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELL 374
            AA A+ L+ A ++A+ LA+ E+RR ++L+A L+E ++++LE KL   DEL+Q+++ ER+SLE+ R +L+
Sbjct:  448 AAAASCLAAAAVKAKHLAQIEERRIKSLVAQLVETQMKKLEMKLRHFDELEQIMDKERESLEYQRHQLI 516          
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: A0A2H2I4A1_CAEJA (Uncharacterized protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2I4A1_CAEJA)

HSP 1 Score: 56.6 bits (135), Expect = 5.430e-5
Identity = 30/69 (43.48%), Postives = 53/69 (76.81%), Query Frame = 0
Query:  306 AARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELL 374
            AA A+ L+ A ++A+ LA+ E+RR ++L+A L+E ++++LE KL   DEL+Q+++ ER+SLE+ R +L+
Sbjct:  439 AAAASCLAAAAVKAKHLAQIEERRIKSLVAQLVETQMKKLEMKLRHFDELEQIMDKERESLEYQRHQLI 507          
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Match: A8XGN4_CAEBR (Protein CBR-SWSN-1 n=2 Tax=Caenorhabditis TaxID=6237 RepID=A8XGN4_CAEBR)

HSP 1 Score: 56.6 bits (135), Expect = 5.450e-5
Identity = 30/69 (43.48%), Postives = 53/69 (76.81%), Query Frame = 0
Query:  306 AARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLHCLDELDQVLEAERQSLEHDRAELL 374
            AA A+ L+ A ++A+ LA+ E+RR ++L+A L+E ++++LE KL   DEL+Q+++ ER+SLE+ R +L+
Sbjct:  450 AAAASCLAAAAVKAKHLAQIEERRIKSLVAQLVETQMKKLEMKLRHFDELEQIMDKERESLEYQRHQLI 518          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14343.2992.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JSE9_9PHAE1.060e-4037.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMT7_ECTSI8.800e-2882.72Phasmid Socket Absent family member (Psa-1) n=1 Ta... [more]
T1H8S7_RHOPR1.410e-524.23Uncharacterized protein n=5 Tax=Triatominae TaxID=... [more]
A0A8C1ZEB7_CYPCA1.890e-531.60SWI/SNF related, matrix associated, actin dependen... [more]
A0A2B4SQ03_STYPI1.910e-529.30SWI/SNF complex subunit SMARCC2 n=4 Tax=Pocillopor... [more]
UPI001BD29E7F3.270e-529.25SWI/SNF complex subunit SMARCC1b n=1 Tax=Cheilinus... [more]
A0A0R3QGH9_9BILA4.390e-542.03SWIRM-assoc_1 domain-containing protein n=1 Tax=Br... [more]
G5EF87_CAEEL5.430e-543.48SANT domain-containing protein n=8 Tax=Caenorhabdi... [more]
A0A2H2I4A1_CAEJA5.430e-543.48Uncharacterized protein n=1 Tax=Caenorhabditis jap... [more]
A8XGN4_CAEBR5.450e-543.48Protein CBR-SWSN-1 n=2 Tax=Caenorhabditis TaxID=62... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 335..376
NoneNo IPR availablePANTHERPTHR12802:SF41BRAHMA ASSOCIATED PROTEIN 155 KDAcoord: 8..379
NoneNo IPR availablePANTHERPTHR12802SWI/SNF COMPLEX-RELATEDcoord: 8..379
IPR032451SMARCC, C-terminalPFAMPF16495SWIRM-assoc_1coord: 311..379
e-value: 6.8E-14
score: 51.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14343contigH-elongata_contig14343:4193..6472 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14343.2992.1mRNA_H-elongata_contig14343.2992.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14343 4166..7994 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14343.2992.1 ID=prot_H-elongata_contig14343.2992.1|Name=mRNA_H-elongata_contig14343.2992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=385bp
MEAAVATPDQWETVAFQVGGGRTPTACMRQFLNLAVEEVLGEQNEQGPAT
GRGATSEAWVSKIGTLPDGDSEGFAENPAQKGADGGAVKSIAPSLSLMRQ
DTPPQGGKAAAESTHVGVGSTSGKGGTESYSDIGEAVASAGTGFITGADV
DVDKDSHRRECRTPLGQNAPALMLASALVSSVHPEVLRAAASAAAVAAED
VARRWDASSKCEITAALVDSGRGGSLLEASRIAESSMGPRNEDVIMLEAT
AREPGVELGQARRDLDATSNGKSKRSSETHAAAPWALKRGIGRLDEVERR
ISRAAAARAAVLSVAGLQARGLAEQEDRRTEALIADLLEARLQRLETKLH
CLDELDQVLEAERQSLEHDRAELLANQAQSMLSK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032451SMARCC_C