prot_H-elongata_contig14343.2991.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14343.2991.1
Unique Nameprot_H-elongata_contig14343.2991.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length378
Homology
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A6H5JSE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE9_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 9.160e-59
Identity = 159/377 (42.18%), Postives = 195/377 (51.72%), Query Frame = 0
Query:    4 KPLLDPKVKEVVSQDLATEEIRRVRRKDSDPSRPSLPFLHQARAADGARSAWNEKRAALLPNGEAPPPPRYQENGKDGRSQAATAVETSGGERGAPGTQSEPGAPAAIAPPELGKAREGEGKEG---ERARLSGIDTKPNGVISSKKPVEPPPSSVGELAASALATPTAEAIPGQDPTSPERGIGAGSSDGEATETTGNCRGDGSSSKPKRLEDEEDQGLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEHALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHLWN--PTLAGP 375
            KPL DPKV EVVSQDLAT+EI+R                 Q    +G   A  E+++ L   G+        E    G S+  TA        G+ G Q  P        P++G +    G+     E  R  G  TKPNGV  +      P  + G +    L   +A  +P    +    G G   S     +T    R    +        E                 EEG  +ER     +   +CP+HALPVAR FFD+++VS  EMR LPEFFTGRSASKT EMY+QSRNYMVRSYQRMLE D +GQA++TGTECRRKLAGD CSILRIHDFLDRFGLINTR  G+RP S+ + PP+ HLWN  P  AGP
Sbjct:  347 KPLEDPKVDEVVSQDLATQEIKR----------------RQQPRPNGGGKAEGEEKSGLGKLGK--------ERTSAGGSEPQTA--------GSKGKQDPP--------PKVGGSGNAAGESSGGDEGVRAEGKSTKPNGVAVAGAASSSPSKAAGAMPPP-LPKSSAVDLPSSTSSLSSSGPGESPSSTSDRKTAVKARSSEGARPGPEARKETXXXXXXXXXXXXXXXXEEGAGEER-----RTISQCPDHALPVARTFFDFEAVSDLEMRMLPEFFTGRSASKTPEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRAVGQRPASYSIAPPATHLWNQTPRSAGP 677          
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: D8LMT8_ECTSI (Internalin protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT8_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 5.570e-53
Identity = 98/140 (70.00%), Postives = 111/140 (79.29%), Query Frame = 0
Query:  241 GRGKRQKGPRCPEHALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHLWN--PTLAGPGHP 378
            G  KR   P CP+HALPVAR FFD+++VS  EMR LPEFFTGRSASKT EMY+QSRNYMVRSYQRMLE D +GQA++ GTECRRKLAGD CSILRIHDFL RF L+NTRT G+RP S+ + PP+ HLW   P  AGP  P
Sbjct:  424 GEEKRTTSP-CPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYMQSRNYMVRSYQRMLEVDPDGQAFLMGTECRRKLAGDACSILRIHDFLHRFRLLNTRTVGKRPASYSLAPPAPHLWKHTPRSAGPAPP 562          
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A2G9RJT8_LITCT (SWIRM domain-containing protein (Fragment) n=5 Tax=Ranidae TaxID=8397 RepID=A0A2G9RJT8_LITCT)

HSP 1 Score: 105 bits (263), Expect = 2.310e-23
Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 0
Query:  256 LPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 367
            +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:   33 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 138          
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A7L2UIE3_BALRX (SMRC2 protein (Fragment) n=13 Tax=Neognathae TaxID=8825 RepID=A0A7L2UIE3_BALRX)

HSP 1 Score: 107 bits (268), Expect = 4.640e-23
Identity = 62/158 (39.24%), Postives = 88/158 (55.70%), Query Frame = 0
Query:  219 GLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEH---------ALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 367
            GLW+ EE +  G           +G++ K P   E           +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:   82 GLWQDEEENGTG----------SKGEQAKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 223          
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A6J1WID0_GALME (SWI/SNF complex subunit SMARCC2-like n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J1WID0_GALME)

HSP 1 Score: 101 bits (251), Expect = 2.960e-22
Identity = 48/112 (42.86%), Postives = 71/112 (63.39%), Query Frame = 0
Query:  256 LPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 367
            +P   A+FDY+S+   E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N   Y+T T CRR LAGDVC+I+R+H FL+++GL+N +      P+    PP+ H 
Sbjct:   20 VPSYSAWFDYNSIHTIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPTEYLTSTACRRNLAGDVCAIMRVHGFLEQWGLVNYQLEAESRPTAMGPPPTSHF 125          
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A4W3GTU1_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GTU1_CALMI)

HSP 1 Score: 105 bits (263), Expect = 6.410e-22
Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 0
Query:  256 LPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 367
            +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:   84 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 189          
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A7L2PWU7_9PASS (SMRC2 protein (Fragment) n=1 Tax=Hypocryptadius cinnamomeus TaxID=589841 RepID=A0A7L2PWU7_9PASS)

HSP 1 Score: 106 bits (264), Expect = 6.870e-22
Identity = 64/165 (38.79%), Postives = 94/165 (56.97%), Query Frame = 0
Query:  212 LEDEEDQGLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEH---------ALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 367
            L+++ED+ +    ET+ K   E G      +G++ K P   E           +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:  186 LDEQEDESM----ETAGKDEEENGTG---SKGEQAKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 337          
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A7L3XKW0_9AVES (SMRC2 protein (Fragment) n=1 Tax=Calonectris borealis TaxID=1323832 RepID=A0A7L3XKW0_9AVES)

HSP 1 Score: 107 bits (268), Expect = 7.750e-22
Identity = 62/158 (39.24%), Postives = 88/158 (55.70%), Query Frame = 0
Query:  219 GLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEH---------ALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 367
            GLW+ EE +  G           +G++ K P   E           +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:  296 GLWQDEEENGTG----------SKGEQAKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 437          
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A4W3GVH8_CALMI (SWIRM domain-containing protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GVH8_CALMI)

HSP 1 Score: 105 bits (263), Expect = 7.870e-22
Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 0
Query:  256 LPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 367
            +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:  186 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 291          
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Match: A0A091V6D9_NIPNI (SWI/SNF complex subunit SMARCC1 (Fragment) n=1 Tax=Nipponia nippon TaxID=128390 RepID=A0A091V6D9_NIPNI)

HSP 1 Score: 106 bits (264), Expect = 8.100e-22
Identity = 64/165 (38.79%), Postives = 94/165 (56.97%), Query Frame = 0
Query:  212 LEDEEDQGLWRKEETSAKGVSEEGLEKERGRGKRQKGPRCPEH---------ALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMVRSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRTGGRRPPSFPVLPPSVHL 367
            L+++ED+ +    ET+ K   E G      +G++ K P   E           +P   A+FDY+SV A E R LPEFF G++ SKT E+Y+  RN+M+ +Y+       N Q Y+T T CRR LAGDVC+I+R+H FL+++GLIN +      P+    PP+ H 
Sbjct:  251 LDEQEDESM----ETAGKDEEENGTG---SKGEQAKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHF 402          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14343.2991.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSE9_9PHAE9.160e-5942.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMT8_ECTSI5.570e-5370.00Internalin protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A2G9RJT8_LITCT2.310e-2346.43SWIRM domain-containing protein (Fragment) n=5 Tax... [more]
A0A7L2UIE3_BALRX4.640e-2339.24SMRC2 protein (Fragment) n=13 Tax=Neognathae TaxID... [more]
A0A6J1WID0_GALME2.960e-2242.86SWI/SNF complex subunit SMARCC2-like n=1 Tax=Galle... [more]
A0A4W3GTU1_CALMI6.410e-2246.43Uncharacterized protein n=1 Tax=Callorhinchus mili... [more]
A0A7L2PWU7_9PASS6.870e-2238.79SMRC2 protein (Fragment) n=1 Tax=Hypocryptadius ci... [more]
A0A7L3XKW0_9AVES7.750e-2239.24SMRC2 protein (Fragment) n=1 Tax=Calonectris borea... [more]
A0A4W3GVH8_CALMI7.870e-2246.43SWIRM domain-containing protein n=1 Tax=Callorhinc... [more]
A0A091V6D9_NIPNI8.100e-2238.79SWI/SNF complex subunit SMARCC1 (Fragment) n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007526SWIRM domainPFAMPF04433SWIRMcoord: 260..347
e-value: 1.7E-20
score: 73.2
IPR007526SWIRM domainPROSITEPS50934SWIRMcoord: 254..357
score: 19.946
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 260..351
e-value: 3.5E-28
score: 99.4
IPR038044SWI/SNF complex subunit SMARCC2PANTHERPTHR12802:SF105SWI/SNF COMPLEX SUBUNIT SMARCC2coord: 255..354
NoneNo IPR availablePANTHERPTHR12802SWI/SNF COMPLEX-RELATEDcoord: 255..354
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 261..348

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14343contigH-elongata_contig14343:403..3997 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14343.2991.1mRNA_H-elongata_contig14343.2991.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14343 403..3997 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14343.2991.1 ID=prot_H-elongata_contig14343.2991.1|Name=mRNA_H-elongata_contig14343.2991.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=378bp
DALKPLLDPKVKEVVSQDLATEEIRRVRRKDSDPSRPSLPFLHQARAADG
ARSAWNEKRAALLPNGEAPPPPRYQENGKDGRSQAATAVETSGGERGAPG
TQSEPGAPAAIAPPELGKAREGEGKEGERARLSGIDTKPNGVISSKKPVE
PPPSSVGELAASALATPTAEAIPGQDPTSPERGIGAGSSDGEATETTGNC
RGDGSSSKPKRLEDEEDQGLWRKEETSAKGVSEEGLEKERGRGKRQKGPR
CPEHALPVARAFFDYDSVSAFEMRTLPEFFTGRSASKTAEMYIQSRNYMV
RSYQRMLETDRNGQAYMTGTECRRKLAGDVCSILRIHDFLDRFGLINTRT
GGRRPPSFPVLPPSVHLWNPTLAGPGHP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007526SWIRM
IPR036388WH-like_DNA-bd_sf
IPR038044SMARCC2
IPR009057Homeobox-like_sf