prot_H-elongata_contig142776.2959.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig142776.2959.1
Unique Nameprot_H-elongata_contig142776.2959.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length89
Homology
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: D7G858_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G858_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.860e-35
Identity = 64/79 (81.01%), Postives = 70/79 (88.61%), Query Frame = 0
Query:    1 MASVASSDAAVVASKVYDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARY 79
            MAS A   AA V SK+Y+HK IE RWQ++WEEK TF+TPERTEG+PKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARY
Sbjct:    3 MASAAPEAAAAVGSKLYNHKAIEARWQQHWEEKGTFKTPERTEGRPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARY 81          
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A448Z2U8_9STRA (Leucine--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2U8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.010e-28
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 0
Query:    3 SVASSDAAVVASKV-YDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARY 79
            S A+ + + VA+K  Y  +E+E +WQ+YWEE  TF+TPER   KPKK+VLDMFPYPSG+GLHVGHPEGYTASDVMARY
Sbjct:   52 STATDEESTVAAKTGYPFQEVEPKWQKYWEENNTFKTPERDTSKPKKYVLDMFPYPSGAGLHVGHPEGYTASDVMARY 129          
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S0DTQ0_9EUKA (Leucine--tRNA ligase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DTQ0_9EUKA)

HSP 1 Score: 107 bits (268), Expect = 9.660e-28
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 0
Query:   17 YDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARYLLLR 83
            YD  E+E RWQ+ W +++TF TP R++ KPKK++LDMFPYPSGSGLHVGHPEGYTASDVMARY  +R
Sbjct:   97 YDPSEVEPRWQQRWADEKTFATPIRSQDKPKKYILDMFPYPSGSGLHVGHPEGYTASDVMARYYRMR 163          
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S0LTP1_9EUKA (Leucine--tRNA ligase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LTP1_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 1.690e-27
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0
Query:   17 YDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARYLLLR 83
            YDH  +EG+WQ YWEE RTF T  R EGK KK+VLDMFPYPSG+GLHVGHPEGYTASD+MARY  +R
Sbjct:   34 YDHAVVEGKWQAYWEESRTFAT-RRREGKEKKYVLDMFPYPSGAGLHVGHPEGYTASDIMARYWRMR 99          
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S2V1U2_9STRA (Leucine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1U2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.180e-27
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 0
Query:    6 SSDAAVVASKVYDHKEIEGRWQRYWEEKRTFRTPERTE---------GKP-KKFVLDMFPYPSGSGLHVGHPEGYTASDVMARYLLLR 83
            +S   VV +K+YDH+ +E RWQ++WEE +TF+ P+RTE         G P KK+VLDMFPYPSGSGLHVGHPEGYTASD+MARY  +R
Sbjct:   88 TSPETVVPNKLYDHQTVEERWQQHWEENKTFKAPDRTEAVEKAGSTDGLPEKKYVLDMFPYPSGSGLHVGHPEGYTASDIMARYWRMR 175          
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S4AJT1_9STRA (Leucine--tRNA ligase n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AJT1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 8.230e-27
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 0
Query:    2 ASVASSDAAVVASKVYDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARY 79
            A V  S     A   Y   E+E +WQ+YWEE  TF+TPER   KPKK+VLDMFPYPSG+GLHVGHPEGYTASDVMARY
Sbjct:   52 ADVEESSTNTPAKTGYPFAEVEPKWQKYWEENNTFKTPERDTSKPKKYVLDMFPYPSGAGLHVGHPEGYTASDVMARY 129          
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S2YMF4_9STRA (Leucine--tRNA ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YMF4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 9.000e-27
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 0
Query:   17 YDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARY 79
            Y   E+E +WQ+YW++  TF+TPER   KPKK+VLDMFPYPSG+GLHVGHPEGYTASDVMARY
Sbjct:   70 YPFAEVEPKWQKYWKDNHTFKTPERDTSKPKKYVLDMFPYPSGAGLHVGHPEGYTASDVMARY 132          
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S0XJW0_9RHOD (Leucine--tRNA ligase (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJW0_9RHOD)

HSP 1 Score: 105 bits (263), Expect = 1.330e-26
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 0
Query:   17 YDHKEIEGRWQRYWEEKRTFRTPERTEG--KPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARYLLLR 83
            YDH ++E RWQ+YW+E  TFRTPE+ E   KPK +VLDMFPYPSG+GLHVGHPEGYTA+D++ARY  +R
Sbjct:   97 YDHLKVEQRWQQYWKENCTFRTPEKVEDETKPKYYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMR 165          
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A7S4DRP5_9EUKA (Leucine--tRNA ligase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DRP5_9EUKA)

HSP 1 Score: 110 bits (275), Expect = 2.860e-26
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 0
Query:    9 AAVVASKV--YDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMARYLLLR 83
            AA VA+++  YD  EIE RWQ+ W E++TF+TPER +GK K+++LDMFPYPSG+GLHVGHPEGYTASDVMARY  ++
Sbjct:   70 AAGVATELKRYDPAEIEPRWQKIWAEEKTFKTPERRDGKEKRYILDMFPYPSGAGLHVGHPEGYTASDVMARYYRMK 146          
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Match: A0A8J6YRJ3_9BACL (Leucine--tRNA ligase (Fragment) n=2 Tax=Thermicanus TaxID=94008 RepID=A0A8J6YRJ3_9BACL)

HSP 1 Score: 101 bits (252), Expect = 3.820e-26
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 0
Query:   17 YDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFVLDMFPYPSGSGLHVGHPEGYTASDVMAR 78
            + H+EIE +WQRYWEEK+ F+T E    KPK +VLDMFPYPSG+GLHVGHPEGYTA+D++AR
Sbjct:    3 FQHREIEKKWQRYWEEKKVFKTREEDRTKPKFYVLDMFPYPSGAGLHVGHPEGYTATDIIAR 64          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142776.2959.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G858_ECTSI1.860e-3581.01Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A448Z2U8_9STRA5.010e-2867.95Leucine--tRNA ligase n=1 Tax=Pseudo-nitzschia mult... [more]
A0A7S0DTQ0_9EUKA9.660e-2870.15Leucine--tRNA ligase (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S0LTP1_9EUKA1.690e-2774.63Leucine--tRNA ligase (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S2V1U2_9STRA4.180e-2761.36Leucine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4AJT1_9STRA8.230e-2766.67Leucine--tRNA ligase n=2 Tax=Pseudo-nitzschia aust... [more]
A0A7S2YMF4_9STRA9.000e-2773.02Leucine--tRNA ligase (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S0XJW0_9RHOD1.330e-2668.12Leucine--tRNA ligase (Fragment) n=1 Tax=Erythrolob... [more]
A0A7S4DRP5_9EUKA2.860e-2666.23Leucine--tRNA ligase n=1 Tax=Lotharella globosa Ta... [more]
A0A8J6YRJ3_9BACL3.820e-2669.35Leucine--tRNA ligase (Fragment) n=2 Tax=Thermicanu... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 14..83
e-value: 2.1E-19
score: 71.8
NoneNo IPR availablePANTHERPTHR43740:SF6LEUCINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIALcoord: 8..81
NoneNo IPR availableSUPERFAMILY52374Nucleotidylyl transferasecoord: 14..82
IPR002302Leucine-tRNA ligasePANTHERPTHR43740FAMILY NOT NAMEDcoord: 8..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142776contigH-elongata_contig142776:322..588 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142776.2959.1mRNA_H-elongata_contig142776.2959.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig142776 322..588 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig142776.2959.1 ID=prot_H-elongata_contig142776.2959.1|Name=mRNA_H-elongata_contig142776.2959.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MASVASSDAAVVASKVYDHKEIEGRWQRYWEEKRTFRTPERTEGKPKKFV
LDMFPYPSGSGLHVGHPEGYTASDVMARYLLLRILTLS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold
IPR002302Leu-tRNA-ligase