prot_H-elongata_contig142463.2938.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig142463.2938.1
Unique Nameprot_H-elongata_contig142463.2938.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length65
Homology
BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A6H5KJY9_9PHAE (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY9_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.700e-27
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 0
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVNW 64
            +DNPDQRVTADA+AL  AFA+V+H T+V PGL+ FYTWYLV MFGW APVACY+YF+VAS +NW
Sbjct:  268 IDNPDQRVTADAEALVAAFATVLHETLVAPGLVAFYTWYLVSMFGWVAPVACYVYFIVASAINW 331          
BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: D7FQX4_ECTSI (ATP-binding cassette, sub-family D, member 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX4_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 5.640e-27
Identity = 48/64 (75.00%), Postives = 57/64 (89.06%), Query Frame = 0
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVNW 64
            +DNPDQRVTADA+AL  AFA+V+H T+V PGL+ FYTWYLVGMFGW APVACY+YF+VAS +NW
Sbjct:  258 IDNPDQRVTADAEALVAAFATVLHETLVAPGLVAFYTWYLVGMFGWVAPVACYVYFIVASAINW 321          
BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A836CDC0_9STRA (ABC transporter transmembrane region 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDC0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.640e-17
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 0
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 63
            +DNPDQR+ +DA ALT A   V+  T+VVPGL+ +YTWY+  +FGW AP ACY YF +A  +N
Sbjct:  270 VDNPDQRIVSDAAALTTAMGEVIQKTLVVPGLLAYYTWYVAALFGWVAPAACYAYFALAGALN 332          
BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A1Y2GUI1_9FUNG (ABC transporter transmembrane region 2-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GUI1_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 2.710e-8
Identity = 26/63 (41.27%), Postives = 43/63 (68.25%), Query Frame = 0
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 63
            +DNPDQR+T D D ++++   +V   I++P LIVFYT+    M GW  PV  Y +F++++I++
Sbjct:  204 VDNPDQRITQDIDKMSESMRKMVEDLIIIPLLIVFYTYQCWMMTGWIGPVCIYGFFLLSTIIS 266          
BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A6A4RNT5_SCOMX (ABC transmembrane type-1 domain-containing protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4RNT5_SCOMX)

HSP 1 Score: 55.1 bits (131), Expect = 3.280e-7
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 63
            +DNPDQR++ DA+ L K  +++    IV P  + +YT++ +   GW  PV+ + YFVV +I N
Sbjct:   98 IDNPDQRISQDAERLCKQMSTMASRLIVSPFTLTYYTYHCLHSTGWIGPVSIFGYFVVGTIAN 160          
BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A8D3BS93_SCOMX (ABC transmembrane type-1 domain-containing protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3BS93_SCOMX)

HSP 1 Score: 55.1 bits (131), Expect = 3.280e-7
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 63
            +DNPDQR++ DA+ L K  +++    IV P  + +YT++ +   GW  PV+ + YFVV +I N
Sbjct:   99 IDNPDQRISQDAERLCKQMSTMASRLIVSPFTLTYYTYHCLHSTGWIGPVSIFGYFVVGTIAN 161          
BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A2U9CTQ2_SCOMX (Putative ATP-binding cassette sub-family D member 4 isoform 2 n=10 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A2U9CTQ2_SCOMX)

HSP 1 Score: 55.1 bits (131), Expect = 3.310e-7
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 63
            +DNPDQR++ DA+ L K  +++    IV P  + +YT++ +   GW  PV+ + YFVV +I N
Sbjct:  140 IDNPDQRISQDAERLCKQMSTMASRLIVSPFTLTYYTYHCLHSTGWIGPVSIFGYFVVGTIAN 202          
BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A4W6D0A3_LATCA (ATP binding cassette subfamily D member 4 n=30 Tax=Percomorphaceae TaxID=1489872 RepID=A0A4W6D0A3_LATCA)

HSP 1 Score: 55.1 bits (131), Expect = 3.310e-7
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 63
            +DNPDQR++ DA+ L K  +++    IV P  + +YT++     GW  PV+ + YFVV +I N
Sbjct:  140 IDNPDQRISQDAERLCKQMSTMASRLIVSPFTLAYYTYHCFYSTGWIGPVSIFAYFVVGTIAN 202          
BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A669BBT9_ORENI (ABC transmembrane type-1 domain-containing protein n=2 Tax=Oreochromis TaxID=8139 RepID=A0A669BBT9_ORENI)

HSP 1 Score: 54.7 bits (130), Expect = 4.470e-7
Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 63
            +DNPDQR++ DA+ L K  +S+    I+ P  + +YT++     GW  PV+ + YFV+ +I N
Sbjct:  140 IDNPDQRISQDAERLCKQMSSMASRLIISPFTLTYYTYHCFHSTGWIGPVSIFGYFVIGTIAN 202          
BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A444U441_ACIRT (ATP-binding cassette sub-family D member 4 (Fragment) n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444U441_ACIRT)

HSP 1 Score: 54.7 bits (130), Expect = 4.500e-7
Identity = 21/63 (33.33%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 63
            +DNPDQR++ DA+   K  +++    ++ P  +V+YT+      GW  PV+ ++YF++ ++VN
Sbjct:  126 IDNPDQRISQDAERFCKQMSTMASKLLISPFTLVYYTYQCFHSTGWKGPVSIFIYFIIGTVVN 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJY9_9PHAE3.700e-2773.44ABC transmembrane type-1 domain-containing protein... [more]
D7FQX4_ECTSI5.640e-2775.00ATP-binding cassette, sub-family D, member 4 n=1 T... [more]
A0A836CDC0_9STRA1.640e-1755.56ABC transporter transmembrane region 2-domain-cont... [more]
A0A1Y2GUI1_9FUNG2.710e-841.27ABC transporter transmembrane region 2-domain-cont... [more]
A0A6A4RNT5_SCOMX3.280e-739.68ABC transmembrane type-1 domain-containing protein... [more]
A0A8D3BS93_SCOMX3.280e-739.68ABC transmembrane type-1 domain-containing protein... [more]
A0A2U9CTQ2_SCOMX3.310e-739.68Putative ATP-binding cassette sub-family D member ... [more]
A0A4W6D0A3_LATCA3.310e-739.68ATP binding cassette subfamily D member 4 n=30 Tax... [more]
A0A669BBT9_ORENI4.470e-738.10ABC transmembrane type-1 domain-containing protein... [more]
A0A444U441_ACIRT4.500e-733.33ATP-binding cassette sub-family D member 4 (Fragme... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011527ABC transporter type 1, transmembrane domainPFAMPF06472ABC_membrane_2coord: 1..62
e-value: 5.9E-8
score: 32.4
NoneNo IPR availablePANTHERPTHR11384:SF28ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 4coord: 1..63
NoneNo IPR availablePANTHERPTHR11384ATP-BINDING CASSETTE, SUB-FAMILY D MEMBERcoord: 1..63
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 44..62
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..17
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 63..64
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 18..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..43
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 46..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142463contigH-elongata_contig142463:209..403 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142463.2938.1mRNA_H-elongata_contig142463.2938.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig142463 209..403 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig142463.2938.1 ID=prot_H-elongata_contig142463.2938.1|Name=mRNA_H-elongata_contig142463.2938.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPV
ACYLYFVVASIVNW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011527ABC1_TM_dom