prot_H-elongata_contig142060.2909.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig142060.2909.1
Unique Nameprot_H-elongata_contig142060.2909.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length187
Homology
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: D7FVC8_ECTSI (DNA replication licensing factor MCM3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVC8_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 6.670e-111
Identity = 167/182 (91.76%), Postives = 176/182 (96.70%), Query Frame = 0
Query:    1 RDRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 182
            RDRINALKG  H RL+VDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAF KTLKDR+I IGFEGSFGHQH+SPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQ+FT+REYRDSTA+ELGLD+GGR NLPTTTLYPTKDA+G+PLETEYGLCRFKDHQTVTIQ
Sbjct:   41 RDRINALKGAKHLRLVVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFIKTLKDRDILIGFEGSFGHQHVSPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQSFTSREYRDSTAVELGLDAGGRENLPTTTLYPTKDAEGHPLETEYGLCRFKDHQTVTIQ 222          
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A835Z466_9STRA (DNA replication licensing factor MCM3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z466_9STRA)

HSP 1 Score: 202 bits (513), Expect = 2.200e-57
Identity = 101/177 (57.06%), Postives = 130/177 (73.45%), Query Frame = 0
Query:    2 DRINALKGK-SHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQ 177
            DRI  L       RL++ LNHLR +   D+A R+MRRP PYM+A REAA+++AL  DP+F K L+DR I  GFEG+FGHQH+SPR L++ +L+ LVCVEGIVTKC++VRPKL+KSVH+ P+    T REYRD T++ELGL+ GG   + T    PTKD + N LE EYGLC++KDHQ
Sbjct:   50 DRIGKLMATPKKLRLLISLNHLRKNQSLDVA-RLMRRPLPYMWAFREAAKEIALREDPSFAKVLRDREI--GFEGAFGHQHVSPRSLISHFLKMLVCVEGIVTKCSNVRPKLMKSVHYCPATGEHTQREYRDGTSLELGLEIGGTMQMVTQGGQPTKDPENNTLEVEYGLCQYKDHQ 223          
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: K8Z007_NANGC (Dna replication licensing factor mcm3 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z007_NANGC)

HSP 1 Score: 184 bits (467), Expect = 1.520e-55
Identity = 91/183 (49.73%), Postives = 126/183 (68.85%), Query Frame = 0
Query:    1 RDRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRN-IHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 182
            +D I     K   R++V+LN LR     +LA R++  P  Y+ AL  A ++VA  +DP+F K L   + + +GF+G+FG  H+SPRGL +  L  LVCVEGIVTKC+ VRPK+V+SVH+ P+ Q    R+YRD+T++ +GL++GGR  LPT   YP KD DG+PLETE+GL  +KDHQ+VTIQ
Sbjct:   45 KDSIAHTLSKKGRRVVVNLNDLREFD-VELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRRLAQLVCVEGIVTKCSLVRPKVVRSVHYCPAKQEHLVRDYRDATSISIGLEAGGRPMLPTNNTYPNKDKDGHPLETEFGLSTYKDHQSVTIQ 226          
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A7S1XKS1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKS1_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.770e-55
Identity = 83/142 (58.45%), Postives = 109/142 (76.76%), Query Frame = 0
Query:   41 YMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 182
            Y+Y L  A  D A  +DPA+ KT  D+ + +GFEGSFG  H+SPRGLL+ ++ +LVCV+GIVTKC  VRPK+V+SVH+ P+ +  TTR+YRD+TA++LGL+  GR  LPT  +YPT+D +GN LETE+GLC FKDHQ VTIQ
Sbjct:    1 YIYPLMRAITDNAKDLDPAYGKTQGDKLVQVGFEGSFGEHHVSPRGLLSRFICSLVCVDGIVTKCGVVRPKVVRSVHYCPATKEHTTRDYRDATAVDLGLEVNGRPLLPTPVVYPTRDPEGNLLETEFGLCDFKDHQVVTIQ 142          
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A4D9D854_9STRA (DNA replication licensing factor MCM3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D854_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.800e-50
Identity = 90/183 (49.18%), Postives = 126/183 (68.85%), Query Frame = 0
Query:    1 RDRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRN-IHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 182
            +D I     K   R++V+LN LR     +LA R++  P  Y+ AL  A ++V   +DP+F K L   + + +GF+G+FG  H+SPRGL +  L  LVCVEGIVTKC+ VRPK+V+SVH+ P+ Q    R+YRD+T++ +GL++GGR  LPT   YP+KD DG+PLETE+GL  +KDHQ+VTIQ
Sbjct:   45 KDSIAHTLSKKGRRVVVNLNDLREFD-VELARRVITSPLEYLLALETAVKEVTQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRRLAQLVCVEGIVTKCSLVRPKVVRSVHYCPAKQEHLVRDYRDATSISIGLEAGGRPMLPTNNTYPSKDKDGHPLETEFGLSTYKDHQSVTIQ 226          
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A7S3M7F8_9STRA (DNA replication licensing factor MCM3 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7F8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 6.800e-50
Identity = 89/171 (52.05%), Postives = 130/171 (76.02%), Query Frame = 0
Query:   14 RLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLD-SGGRGN-LPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 182
            R IVD+N LRS   G+LA +I+RRP  Y+ AL+EA  + +  +DP+F K LK  ++ +GFEGSFG   +SPRGL +S L +LV VEGI+TKC+SVRPKL++SV + P+ + ++ R+YRD+T++++G++ +GG G  LPT++  PT DADGNPLE E+GLC +KD+QT+ +Q
Sbjct:   42 RFIVDINELRSF-EGELANKIIRRPREYIVALQEAGVERSKKIDPSFEKVLKSADLQVGFEGSFGPNAVSPRGLNSSMLNSLVQVEGIITKCSSVRPKLMRSVQYCPATKLWSIRDYRDATSIDIGIEVTGGSGERLPTSSALPTSDADGNPLEIEHGLCMYKDYQTLVLQ 211          
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A314YEX0_PRUYE (DNA replication licensing factor MCM3 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314YEX0_PRUYE)

HSP 1 Score: 167 bits (424), Expect = 1.990e-48
Identity = 85/181 (46.96%), Postives = 124/181 (68.51%), Query Frame = 0
Query:    2 DRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 182
            D I A+   +  RLIVD++HL S G  D+  RI+R P+ Y+ +  +AA ++A  +DP + K  +   + +GF+G F  + ++PR LL+ Y+ ++VCV GIVTKC+ VRPK+VKSVHF P+   FTTREYRD T+  +GL        PT ++YPT+D +GN L TEYGLC++KDHQT+++Q
Sbjct:   26 DEIRAIINHNRRRLIVDISHLHSYG-DDIGARILRNPSDYLQSFNDAATEIANRIDPRYLK--QGEQLLVGFQGPFVSRRVTPRDLLSEYIGSMVCVHGIVTKCSLVRPKVVKSVHFCPTTGNFTTREYRDITS-NMGL--------PTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQ 194          
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A482RYX9_9ARCH (Minichromosome maintenance protein MCM n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYX9_9ARCH)

HSP 1 Score: 169 bits (428), Expect = 5.330e-48
Identity = 85/183 (46.45%), Postives = 124/183 (67.76%), Query Frame = 0
Query:    2 DRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLD--SGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 182
            D+I     +   R ++++N LRS    +LA RI+R+P  YM AL+EAA + A ++DPA+ K L  +++ +GFEGSFG   ISPRGL +  L TLV VEGI+ KC+SVRPKL++SV + P+   ++ REYRD+TA+++G+          PT+++ PTKD +GN LE E GLC +KD+Q V +Q
Sbjct:   30 DKIKESINEKKYRFVLNINELRSR-ETELASRILRQPREYMIALQEAASETARSLDPAYEKLLNTKDLQVGFEGSFGANSISPRGLNSRLLNTLVEVEGIIVKCSSVRPKLMRSVQYCPTTNQYSLREYRDATALDVGIKVRDDAPEKFPTSSIMPTKDVNGNVLELEPGLCSYKDYQVVVLQ 211          
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A251PHA3_PRUPE (DNA replication licensing factor MCM3 n=8 Tax=Prunus TaxID=3754 RepID=A0A251PHA3_PRUPE)

HSP 1 Score: 167 bits (424), Expect = 6.170e-45
Identity = 85/181 (46.96%), Postives = 124/181 (68.51%), Query Frame = 0
Query:    2 DRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 182
            D I A+   +  RLIVD++HL S G  D+  RI+R P+ Y+ +  +AA ++A  +DP + K  +   + +GF+G F  + ++PR LL+ Y+ ++VCV GIVTKC+ VRPK+VKSVHF P+   FTTREYRD T+  +GL        PT ++YPT+D +GN L TEYGLC++KDHQT+++Q
Sbjct:   26 DEIRAIINHNRRRLIVDISHLHSYG-DDIGARILRNPSDYLQSFNDAATEIANRIDPRYLK--QGEQLLVGFQGPFVSRRVTPRDLLSEYIGSMVCVHGIVTKCSLVRPKVVKSVHFCPTTGNFTTREYRDITS-NMGL--------PTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQ 194          
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: D7TK30_VITVI (DNA replication licensing factor MCM3 n=4 Tax=Vitis TaxID=3603 RepID=D7TK30_VITVI)

HSP 1 Score: 166 bits (421), Expect = 1.490e-44
Identity = 89/181 (49.17%), Postives = 124/181 (68.51%), Query Frame = 0
Query:    2 DRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 182
            D I A+      RLI++++ L  D R DLA RI++ P  YM    +AA DV+  +DP + K  +   I +GFEG F  + ++PR LL+S++ ++VCVEGIVTKC+ VRPK+VKSVHF PS+  FTTREYRD T+  +GL        PT ++YPT+D +GN L TEYGLC++KDHQT+++Q
Sbjct:   30 DEIKAMINHKRHRLILNISDLH-DYRTDLAHRILKNPGEYMQPFSDAATDVSRNLDPKYLK--EGEQILVGFEGPFVSRRVTPRDLLSSFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPSSGNFTTREYRDITS-NMGL--------PTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQ 198          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVC8_ECTSI6.670e-11191.76DNA replication licensing factor MCM3 n=2 Tax=Ecto... [more]
A0A835Z466_9STRA2.200e-5757.06DNA replication licensing factor MCM3 n=1 Tax=Trib... [more]
K8Z007_NANGC1.520e-5549.73Dna replication licensing factor mcm3 (Fragment) n... [more]
A0A7S1XKS1_9STRA1.770e-5558.45Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A4D9D854_9STRA2.800e-5049.18DNA replication licensing factor MCM3 n=1 Tax=Nann... [more]
A0A7S3M7F8_9STRA6.800e-5052.05DNA replication licensing factor MCM3 n=1 Tax=Spum... [more]
A0A314YEX0_PRUYE1.990e-4846.96DNA replication licensing factor MCM3 n=1 Tax=Prun... [more]
A0A482RYX9_9ARCH5.330e-4846.45Minichromosome maintenance protein MCM n=1 Tax=arc... [more]
A0A251PHA3_PRUPE6.170e-4546.96DNA replication licensing factor MCM3 n=8 Tax=Prun... [more]
D7TK30_VITVI1.490e-4449.17DNA replication licensing factor MCM3 n=4 Tax=Viti... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033762MCM OB domainPFAMPF17207MCM_OBcoord: 85..182
e-value: 3.0E-10
score: 40.0
NoneNo IPR availableGENE3D3.30.1640.10coord: 1..80
e-value: 1.2E-13
score: 53.4
NoneNo IPR availableGENE3D2.40.50.140coord: 85..182
e-value: 4.0E-6
score: 28.4
NoneNo IPR availableGENE3D2.20.28.10coord: 114..170
e-value: 4.0E-6
score: 28.4
NoneNo IPR availablePANTHERPTHR11630:SF46DNA REPLICATION LICENSING FACTOR MCM3coord: 6..182
IPR027925MCM N-terminal domainPFAMPF14551MCM_Ncoord: 1..74
e-value: 4.6E-7
score: 30.4
IPR031327Mini-chromosome maintenance proteinPANTHERPTHR11630DNA REPLICATION LICENSING FACTORcoord: 6..182
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 9..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142060contigH-elongata_contig142060:647..1658 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142060.2909.1mRNA_H-elongata_contig142060.2909.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig142060 647..1658 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig142060.2909.1 ID=prot_H-elongata_contig142060.2909.1|Name=mRNA_H-elongata_contig142060.2909.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
RDRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAAR
DVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEG
IVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPT
TTLYPTKDADGNPLETEYGLCRFKDHQTVTIQVSTL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033762MCM_OB
IPR027925MCM_N
IPR031327MCM
IPR012340NA-bd_OB-fold