prot_H-elongata_contig1420.2906.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1420.2906.1
Unique Nameprot_H-elongata_contig1420.2906.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length136
Homology
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A5BDW5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=16 Tax=Vitis vinifera TaxID=29760 RepID=A5BDW5_VITVI)

HSP 1 Score: 104 bits (260), Expect = 6.460e-26
Identity = 54/137 (39.42%), Postives = 81/137 (59.12%), Query Frame = 0
Query:    1 MDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQD--GLLRKAMYGLVHAGLLW 135
            M       VW +V+ PNG   +G + VFK K D  G IE+YK RLVA+GF Q +GI Y E+ SP   + S+R++L ++A    +  Q+DV  A+L  ++EEE+Y++ PE +  S  +     L+K++YGL  A   W
Sbjct:    5 MSSMKCNDVWDLVDLPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVSKLKKSIYGLKQASRQW 141          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A2N9J7I7_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J7I7_FAGSY)

HSP 1 Score: 110 bits (275), Expect = 1.780e-25
Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = 0
Query:    1 MDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW 135
            M+   + GVW +VE PNG   +G + VFK K D  G IE+YK RLVA+GF Q +GI Y E+ SP   + S+R++L ++A    +  Q+DV  A+L  D+EEE+Y++ PE +  S  +  +  L+K++YGL  A   W
Sbjct:  517 MNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSDGEQLVCKLKKSIYGLKQASRQW 653          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A2N9EM55_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EM55_FAGSY)

HSP 1 Score: 110 bits (275), Expect = 1.810e-25
Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = 0
Query:    1 MDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW 135
            M+   + GVW +VE PNG   +G + VFK K D  G IE+YK RLVA+GF Q +GI Y E+ SP   + S+R++L ++A    +  Q+DV  A+L  D+EEE+Y++ PE +  S  +  +  L+K++YGL  A   W
Sbjct:  709 MNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSDGEQLVCKLKKSIYGLKQASRQW 845          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A2N9HUB9_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HUB9_FAGSY)

HSP 1 Score: 110 bits (274), Expect = 2.340e-25
Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = 0
Query:    1 MDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW 135
            M+   + GVW +VE PNG   +G + VFK K D  G IE+YK RLVA+GF Q +GI Y E+ SP   + S+R++L ++A    +  Q+DV  A+L  D+EEE+Y++ PE +  S  +  +  L+K++YGL  A   W
Sbjct:  483 MNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFPSSDGEHLVCKLKKSIYGLKQASRQW 619          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A2N9IKJ5_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IKJ5_FAGSY)

HSP 1 Score: 110 bits (274), Expect = 2.430e-25
Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = 0
Query:    1 MDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW 135
            M+   + GVW +VE PNG   +G + VFK K D  G IE+YK RLVA+GF Q +GI Y E+ SP   + S+R++L ++A    +  Q+DV  A+L  D+EEE+Y++ PE +  S  +  +  L+K++YGL  A   W
Sbjct:  567 MNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFPSSDGEHLVCKLKKSIYGLKQASRQW 703          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A2N9HZZ3_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HZZ3_FAGSY)

HSP 1 Score: 110 bits (274), Expect = 2.460e-25
Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = 0
Query:    1 MDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW 135
            M+   + GVW +VE PNG   +G + VFK K D  G IE+YK RLVA+GF Q +GI Y E+ SP   + S+R++L ++A    +  Q+DV  A+L  D+EEE+Y++ PE +  S  +  +  L+K++YGL  A   W
Sbjct:  820 MNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFPSSDGEHLVCKLKKSIYGLKQASRQW 956          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A2N9GK36_FAGSY (Uncharacterized protein n=10 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GK36_FAGSY)

HSP 1 Score: 110 bits (274), Expect = 2.470e-25
Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = 0
Query:    1 MDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW 135
            M+   + GVW +VE PNG   +G + VFK K D  G IE+YK RLVA+GF Q +GI Y E+ SP   + S+R++L ++A    +  Q+DV  A+L  D+EEE+Y++ PE +  S  +  +  L+K++YGL  A   W
Sbjct:  750 MNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFPSSDGEHLVCKLKKSIYGLKQASRQW 886          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 110 bits (274), Expect = 2.500e-25
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 0
Query:    8 GVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGLLRKAMYGLVHAGLLW 135
            GV++ V RP    ++G++ VFK K    G++EKYK RLVAQGF QV+GI Y E+ +P     SIR++L + A   W+  Q+DV  A+L  ++EEEIY+++P  ++ S      L+KA+YGL  A   W
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREW 1152          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA)

HSP 1 Score: 104 bits (260), Expect = 6.100e-25
Identity = 51/137 (37.23%), Postives = 82/137 (59.85%), Query Frame = 0
Query:    1 MDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYR--ESRKQDGLLRKAMYGLVHAGLLW 135
            M+       W++V++P  +  +G R +F  K    G IE+YK RLVA+G+ Q  GI Y+E+ +P     ++R+VL + A  GW   QLDV  A+L  ++EEE+Y+E+P+ ++    R +  LL+KA+YGL  +   W
Sbjct:   14 MNALERNSTWEIVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQSLRAW 150          
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A2G2YGH0_CAPAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G2YGH0_CAPAN)

HSP 1 Score: 101 bits (251), Expect = 7.660e-25
Identity = 47/127 (37.01%), Postives = 80/127 (62.99%), Query Frame = 0
Query:    6 ARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL-LRKAMYGLVHA 131
            A   W +V+ P G+  +G++ ++K K   +G +E++K RLVA+G+ Q +G+ Y E+ SP     ++R  +T+ A+ GW   Q+DV  A+L+ D+EEE+Y+E+PE +R   +     L K++YGL  A
Sbjct:   10 ANNTWVIVDLPKGKNTVGSKWIYKIKYLSNGEVERFKERLVAKGYSQQEGLDYHETFSPVAKMVTVRCTITLAASQGWNLYQMDVHNAFLQGDLEEEVYIEIPEGFRRQGEDKVCKLIKSLYGLKQA 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A5BDW5_VITVI6.460e-2639.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9J7I7_FAGSY1.780e-2541.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9EM55_FAGSY1.810e-2541.61Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9HUB9_FAGSY2.340e-2541.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9IKJ5_FAGSY2.430e-2541.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HZZ3_FAGSY2.460e-2541.61Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9GK36_FAGSY2.470e-2541.61Uncharacterized protein n=10 Tax=Fagus sylvatica T... [more]
A0A0C2WN23_AMAMK2.500e-2542.97Integrase catalytic domain-containing protein (Fra... [more]
A0A151RGT1_CAJCA6.100e-2537.23Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G2YGH0_CAPAN7.660e-2537.01Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..135
e-value: 1.5E-31
score: 109.9
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..127
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 10..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1420contigH-elongata_contig1420:1546..1953 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1420.2906.1mRNA_H-elongata_contig1420.2906.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1420 463..1956 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1420.2906.1 ID=prot_H-elongata_contig1420.2906.1|Name=mRNA_H-elongata_contig1420.2906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGF
RQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVE
EEIYVELPEAYRESRKQDGLLRKAMYGLVHAGLLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like