prot_H-elongata_contig142.2905.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig142.2905.1
Unique Name	prot_H-elongata_contig142.2905.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	214

Homology

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BLAST of mRNA_H-elongata_contig142.2905.1 vs. uniprot
Match: D8LGG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG6_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.540e-35
Identity = 86/174 (49.43%), Postives = 113/174 (64.94%), Query Frame = 0

Query:   44 MARLEADIELEQIRSEENNNTVHTRSQMRTATRGWLAGVVXXXXXXXXXXXXXXXXXXFMLVPPFVLAGVVGGLIYAQIGDKIRSRRRETVGLD-EHSLVVG-GNSGNKEEFLRQLQGRSVPAATCPNLNAD-SCSPTDSFSRRVVEAAVQALVRSTLDAAASVAMSALGLGEG 214
            M R++A+IELEQ++ EE+ + +  R+Q+RT T GWL GV+   XXXXXXX        FM+V PFV  GV+GGL+Y+Q+ DKIRS  R  + ++ EH    G   S +K+EFLRQLQGRS P+AT  ++  D S  P+ SF RRV   A   LVRS LD  A+ A + LGLG G
Sbjct:    1 MGRIQAEIELEQLQREESGSAMTARNQVRTVTAGWLVGVILGWXXXXXXXCLFSPALGFMMVLPFVSGGVIGGLVYSQLRDKIRSLSRRPMPMEQEHQQPRGRSRSEDKQEFLRQLQGRSDPSATYLHMGTDDSTLPSGSFLRRVALGATHILVRSALDVTAAAACAMLGLGRG 174

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig142.2905.1 vs. uniprot

BLAST of mRNA_H-elongata_contig142.2905.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LGG6_ECTSI	1.540e-35	49.43	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..77
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 123..214
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 78..98
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 99..103
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 104..122
None	No IPR available	TMHMM	TMhelix		coord: 104..123
None	No IPR available	TMHMM	TMhelix		coord: 78..100

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig142	contig	H-elongata_contig142:7189..12557 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig142.2905.1	mRNA_H-elongata_contig142.2905.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig142 7189..12557 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig142.2905.1 ID=prot_H-elongata_contig142.2905.1|Name=mRNA_H-elongata_contig142.2905.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
MYSTLEEEELTAQRDAAISLFKGLQEKIREQADSYEVRTEAAEMARLEAD
IELEQIRSEENNNTVHTRSQMRTATRGWLAGVVLGWSAAFVLGCSFSPVL
GFMLVPPFVLAGVVGGLIYAQIGDKIRSRRRETVGLDEHSLVVGGNSGNK
EEFLRQLQGRSVPAATCPNLNADSCSPTDSFSRRVVEAAVQALVRSTLDA
AASVAMSALGLGEG