prot_H-elongata_contig141821.2893.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig141821.2893.1
Unique Nameprot_H-elongata_contig141821.2893.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length78
Homology
[Close]
BLAST of mRNA_H-elongata_contig141821.2893.1 vs. uniprot
Match: A0A7X3RZ23_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3RZ23_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 1.290e-5
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 0 
Query:   14 DRAALGIVFDTTSGVDESDDGERAVTWINHRDWKTDKPLGSWFGVRTSADGRVEALALRGNRCTG 78
            DR  L I++  T+G DE         W N+ +W +D+PL +W+GVRT++DG V  L L  N   G
Sbjct:  385 DREVLTILYQATNG-DE---------WTNNENWLSDRPLNTWYGVRTNSDGEVVRLELSRNNLQG 439
[Close]
BLAST of mRNA_H-elongata_contig141821.2893.1 vs. uniprot
Match: A0A6L7MKX6_9CHLR (Uncharacterized protein n=2 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6L7MKX6_9CHLR)

HSP 1 Score: 51.2 bits (121), Expect = 1.290e-5
Identity = 26/65 (40.00%), Postives = 34/65 (52.31%), Query Frame = 0 
Query:   14 DRAALGIVFDTTSGVDESDDGERAVTWINHRDWKTDKPLGSWFGVRTSADGRVEALALRGNRCTG 78
            DRA L  +++ T G D          W +  +W +DKP+ +W GV T ADGRV  L L GN   G
Sbjct:  270 DRAVLVALYEETEGTD----------WYDATNWLSDKPMRTWSGVTTDADGRVTGLYLSGNLLNG 324
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141821.2893.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7X3RZ23_9BACT1.290e-540.00Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A6L7MKX6_9CHLR1.290e-540.00Uncharacterized protein n=2 Tax=Dehalococcoidia ba... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 9..78
e-value: 4.1E-8
score: 33.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141821contigH-elongata_contig141821:588..1016 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141821.2893.1mRNA_H-elongata_contig141821.2893.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig141821 588..1177 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig141821.2893.1 ID=prot_H-elongata_contig141821.2893.1|Name=mRNA_H-elongata_contig141821.2893.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MVQAIMAENGFLHDRAALGIVFDTTSGVDESDDGERAVTWINHRDWKTDK
PLGSWFGVRTSADGRVEALALRGNRCTG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf