prot_H-elongata_contig141681.2886.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig141681.2886.1
Unique Nameprot_H-elongata_contig141681.2886.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length54
Homology
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BLAST of mRNA_H-elongata_contig141681.2886.1 vs. uniprot
Match: D8LFT1_ECTSI (Cation efflux family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.820e-15
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 
Query:   10 DRTSSRLAIFGLLNLSYVVLQLTGAMAFGSLALLSDGFHNLSDV 53
            D+ S RLAIFGLLNL YVVLQL GAMAFGSLAL+SDGFHNLSDV
Sbjct:   75 DKMSGRLAIFGLLNLGYVVLQLAGAMAFGSLALMSDGFHNLSDV 118
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BLAST of mRNA_H-elongata_contig141681.2886.1 vs. uniprot
Match: F4PLY9_CAVFA (Putative zinc transporter n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PLY9_CAVFA)

HSP 1 Score: 48.1 bits (113), Expect = 5.870e-5
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0 
Query:   10 DRTSSRLAIFGLLNLSYVVLQLTGAMAFGSLALLSDGFHNLSDV 53
            D+ +  L I G+L + YV+ +L  A+  GSLALLSDGFHNL+D 
Sbjct:  456 DKKTLSLLIIGVLTVLYVIAELGSALYTGSLALLSDGFHNLTDA 499
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141681.2886.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFT1_ECTSI3.820e-1586.36Cation efflux family protein n=1 Tax=Ectocarpus si... [more]
F4PLY9_CAVFA5.870e-552.27Putative zinc transporter n=1 Tax=Cavenderia fasci... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027469Cation efflux transmembrane domain superfamilyGENE3D1.20.1510.10coord: 13..53
e-value: 3.1E-5
score: 25.6
IPR027469Cation efflux transmembrane domain superfamilySUPERFAMILY161111Cation efflux protein transmembrane domain-likecoord: 11..53
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 44..53
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..43
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141681contigH-elongata_contig141681:918..1079 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141681.2886.1mRNA_H-elongata_contig141681.2886.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig141681 918..1079 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig141681.2886.1 ID=prot_H-elongata_contig141681.2886.1|Name=mRNA_H-elongata_contig141681.2886.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
GVIDTAVVIDRTSSRLAIFGLLNLSYVVLQLTGAMAFGSLALLSDGFHNL
SDV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027469Cation_efflux_TMD_sf